Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30113
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical ...   138   3e-33
AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical ...   138   3e-33
Z99271-4|CAB16474.1|  105|Caenorhabditis elegans Hypothetical pr...    60   2e-09
Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>AL021480-5|CAJ21557.1|  432|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3b protein.
          Length = 432

 Score =  138 bits (335), Expect = 3e-33
 Identities = 68/145 (46%), Positives = 90/145 (62%)
 Frame = +3

Query: 255 LYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTGLVNQC 434
           LY+SQRQGRISFYMT++GEEG H+GSA+AL P+DL++ QYRE GV L+RG T+   +NQC
Sbjct: 103 LYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQC 162

Query: 435 YGNCEDPGKRRQMPVHYGSKHHNMVQYLVH*EHXCPRLLEPLMPTKEFPYNDRCVICYFR 614
           YGN +D GK RQMP+H+G+K  N V          P+ +      K+   N+R  + YF 
Sbjct: 163 YGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFG 222

Query: 615 *RALPRKAMLIRLSTLPATLDCPVI 689
             A          +   ATL CP+I
Sbjct: 223 DGAASEGDAHAAFN-FAATLKCPII 246



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 25/61 (40%), Positives = 40/61 (65%)
 Frame = +1

Query: 73  RAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDK 252
           +A +  +++  N      +PIYRV +  G +IDK+++PN D+ T + MYKTM QL+ MD+
Sbjct: 42  KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 101

Query: 253 I 255
           I
Sbjct: 102 I 102



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 32/66 (48%), Positives = 38/66 (57%)
 Frame = +2

Query: 509 TISSPLGTXMPQAVGAAYAYKXXXXXXXXXXXXXSVTGAASEGDAHSAFNFAGYVRLSCY 688
           TISSPL T +PQAVG+AYA+K                GAASEGDAH+AFNFA  ++    
Sbjct: 188 TISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFG-DGAASEGDAHAAFNFAATLKCPII 246

Query: 689 *CCAGN 706
             C  N
Sbjct: 247 FFCRNN 252


>AL021480-4|CAA16329.2|  431|Caenorhabditis elegans Hypothetical
           protein Y39E4A.3a protein.
          Length = 431

 Score =  138 bits (335), Expect = 3e-33
 Identities = 68/145 (46%), Positives = 90/145 (62%)
 Frame = +3

Query: 255 LYESQRQGRISFYMTNYGEEGIHIGSASALSPKDLVFSQYREVGVFLYRGMTVTGLVNQC 434
           LY+SQRQGRISFYMT++GEEG H+GSA+AL P+DL++ QYRE GV L+RG T+   +NQC
Sbjct: 102 LYDSQRQGRISFYMTSFGEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQC 161

Query: 435 YGNCEDPGKRRQMPVHYGSKHHNMVQYLVH*EHXCPRLLEPLMPTKEFPYNDRCVICYFR 614
           YGN +D GK RQMP+H+G+K  N V          P+ +      K+   N+R  + YF 
Sbjct: 162 YGNADDLGKGRQMPMHFGTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFG 221

Query: 615 *RALPRKAMLIRLSTLPATLDCPVI 689
             A          +   ATL CP+I
Sbjct: 222 DGAASEGDAHAAFN-FAATLKCPII 245



 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 25/61 (40%), Positives = 40/61 (65%)
 Frame = +1

Query: 73  RAPYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDK 252
           +A +  +++  N      +PIYRV +  G +IDK+++PN D+ T + MYKTM QL+ MD+
Sbjct: 41  KAAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDR 100

Query: 253 I 255
           I
Sbjct: 101 I 101



 Score = 58.8 bits (136), Expect = 4e-09
 Identities = 32/66 (48%), Positives = 38/66 (57%)
 Frame = +2

Query: 509 TISSPLGTXMPQAVGAAYAYKXXXXXXXXXXXXXSVTGAASEGDAHSAFNFAGYVRLSCY 688
           TISSPL T +PQAVG+AYA+K                GAASEGDAH+AFNFA  ++    
Sbjct: 187 TISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFG-DGAASEGDAHAAFNFAATLKCPII 245

Query: 689 *CCAGN 706
             C  N
Sbjct: 246 FFCRNN 251


>Z99271-4|CAB16474.1|  105|Caenorhabditis elegans Hypothetical
           protein Y43F4A.4 protein.
          Length = 105

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 25/60 (41%), Positives = 40/60 (66%)
 Frame = +1

Query: 76  APYVSEMKFFNETSYEPIPIYRVMDNNGQIIDKNEEPNLDKATLINMYKTMVQLSHMDKI 255
           A +  +++  N      +PIYRV +  G +IDK+++PN D+ +L+ MYKTM QL+ MD+I
Sbjct: 42  AAFTEKLEIVNADDTPALPIYRVTNAVGDVIDKSQDPNFDEQSLLKMYKTMTQLNIMDRI 101


>Z78064-2|CAB01508.2|  317|Caenorhabditis elegans Hypothetical
           protein F57B1.4 protein.
          Length = 317

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = -1

Query: 682 GQSNVAGKVESRMSIAFRGSARHRK*QITQRSLYGNSFVGISGSNSLGHXCS 527
           G S VAG+++ R S   R S  HR  ++ ++S   ++ VG  G ++ G  CS
Sbjct: 75  GVSGVAGRIK-RESYHRRASGPHRASKVRRQSYGADAAVGGFGGSAGGSCCS 125


>Z19155-4|CAA79560.3|  844|Caenorhabditis elegans Hypothetical
           protein F54G8.5 protein.
          Length = 844

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = -1

Query: 451 SSQFP*HWFTSPVTVIPRYKNTPTSLY*LKTKSFGE----SAEALPMWMP 314
           SS+    W    ++ IPRYK T ++++   +KS  +    + E L  WMP
Sbjct: 220 SSESTERWIDLFLSAIPRYKETNSTIFWSSSKSLAKEMERNGELLIPWMP 269


>U28928-2|AAA68335.2|  329|Caenorhabditis elegans Hypothetical
           protein C44B7.4 protein.
          Length = 329

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = -2

Query: 162 LSVIIHNSINR-NWLVTSFVEEFHFTHVRCSCARKFCYLTTAILCR 28
           + V+I +S+    WL   F++  ++   RC  + +FC ++ AILC+
Sbjct: 105 IEVLIQSSVAPIAWLFVVFLDGGYY---RCYRSHEFCLISDAILCK 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,608,396
Number of Sequences: 27780
Number of extensions: 357096
Number of successful extensions: 904
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 847
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)