Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30109
         (707 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z68219-8|CAD59155.1|  430|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z68219-1|CAA92481.2|  387|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z68216-7|CAD59147.1|  430|Caenorhabditis elegans Hypothetical pr...    28   7.5  

>U21319-1|AAC46673.2|  258|Caenorhabditis elegans Hypothetical
           protein C30G12.4 protein.
          Length = 258

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 21  SYECCLVTFVYIGDTWTFSLVKYMNAFKFIINVIMLLVRFS 143
           S+ECC +TF Y     +  L+ Y   F  II++++  V  S
Sbjct: 97  SFECCSLTFSYSYMMVSCKLLLYYGTFSSIISIVLSCVATS 137


>Z81072-5|CAB03020.1|  591|Caenorhabditis elegans Hypothetical
           protein F30A10.6 protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = -2

Query: 193 IRYSAFTAHCDQREREYENLTRSIITLIINLKAFIYFTKLNV 68
           I Y   T H  +++  Y  L   ++T ++++  F Y T L++
Sbjct: 103 IPYKKTTLHLTEKQIRYNRLFTDMLTHVLSIGGFYYSTTLDI 144


>Z68219-8|CAD59155.1|  430|Caenorhabditis elegans Hypothetical
           protein T05A1.1a protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 445 LFRLCFGNLISCIYTIKLIYVLRVYKQ 525
           +  LC  N++ C+ ++ + ++  VYKQ
Sbjct: 108 ILNLCASNVLMCLTSLPITFITNVYKQ 134


>Z68219-1|CAA92481.2|  387|Caenorhabditis elegans Hypothetical
           protein T05A1.1b protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 445 LFRLCFGNLISCIYTIKLIYVLRVYKQ 525
           +  LC  N++ C+ ++ + ++  VYKQ
Sbjct: 65  ILNLCASNVLMCLTSLPITFITNVYKQ 91


>Z68216-7|CAD59147.1|  430|Caenorhabditis elegans Hypothetical
           protein T05A1.1a protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 445 LFRLCFGNLISCIYTIKLIYVLRVYKQ 525
           +  LC  N++ C+ ++ + ++  VYKQ
Sbjct: 108 ILNLCASNVLMCLTSLPITFITNVYKQ 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,134,971
Number of Sequences: 27780
Number of extensions: 271439
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 591
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)