Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30107
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical p...    30   1.4  
Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical p...    30   1.4  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    29   3.2  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>Z72510-6|CAM84693.1| 2892|Caenorhabditis elegans Hypothetical protein
            F53B7.5b protein.
          Length = 2892

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 505  SIQNLINLKTVSLKLNQCSAVLLTCLQKTLNASYVLL----RMIQGDGSEVGYGF 353
            S+QN + + T+S  +NQCS + +TC   T N    LL     ++ G GS V + F
Sbjct: 1298 SLQNGVTVMTLST-VNQCSVIQVTCSGITANERVTLLAATTSLVSGVGS-VSFNF 1350


>Z72510-5|CAM84692.1| 3095|Caenorhabditis elegans Hypothetical protein
            F53B7.5a protein.
          Length = 3095

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 505  SIQNLINLKTVSLKLNQCSAVLLTCLQKTLNASYVLL----RMIQGDGSEVGYGF 353
            S+QN + + T+S  +NQCS + +TC   T N    LL     ++ G GS V + F
Sbjct: 1298 SLQNGVTVMTLST-VNQCSVIQVTCSGITANERVTLLAATTSLVSGVGS-VSFNF 1350


>Z72507-18|CAM84805.1| 2892|Caenorhabditis elegans Hypothetical
            protein F53B7.5b protein.
          Length = 2892

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 505  SIQNLINLKTVSLKLNQCSAVLLTCLQKTLNASYVLL----RMIQGDGSEVGYGF 353
            S+QN + + T+S  +NQCS + +TC   T N    LL     ++ G GS V + F
Sbjct: 1298 SLQNGVTVMTLST-VNQCSVIQVTCSGITANERVTLLAATTSLVSGVGS-VSFNF 1350


>Z72507-17|CAM84804.1| 3095|Caenorhabditis elegans Hypothetical
            protein F53B7.5a protein.
          Length = 3095

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -3

Query: 505  SIQNLINLKTVSLKLNQCSAVLLTCLQKTLNASYVLL----RMIQGDGSEVGYGF 353
            S+QN + + T+S  +NQCS + +TC   T N    LL     ++ G GS V + F
Sbjct: 1298 SLQNGVTVMTLST-VNQCSVIQVTCSGITANERVTLLAATTSLVSGVGS-VSFNF 1350


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 512 LTVYSEPYKPKNCKLKTKSVFCSTLDLPSENS 417
           LT YS P   K+C ++ +S FC    L + +S
Sbjct: 129 LTAYSAPAGTKSCAVRKESHFCQIFSLTNNSS 160


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 34  CQENCHNADINIRCANMPHRCSCSRL 111
           CQ   HN D + +C N P   SC  L
Sbjct: 712 CQRGDHNCDQHAKCTNRPGSFSCQCL 737


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,306,201
Number of Sequences: 27780
Number of extensions: 262373
Number of successful extensions: 743
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)