Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30093
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   133   1e-31
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   4.7  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   6.2  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z81085-1|CAB03112.3|  263|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   6.2  
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    28   6.2  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  133 bits (322), Expect = 1e-31
 Identities = 60/83 (72%), Positives = 68/83 (81%)
 Frame = +1

Query: 19  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 198
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 199 VHFRDPYKFKTRKELFIAPKPLH 267
           + FRDPYK+KT K   +A + +H
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMH 83



 Score = 87.8 bits (208), Expect = 7e-18
 Identities = 39/76 (51%), Positives = 56/76 (73%)
 Frame = +3

Query: 402 ASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRQQSMVGIVAGGGRIDKPIFESWKGHTT 581
           ASGN+ATVI HNPD K+TR++LPSGAKKV+ S  ++M+G+VAGGGR DKP+ ++ + +  
Sbjct: 129 ASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHK 188

Query: 582 SNKVKRNWLAIM*RGV 629
               + +W  +  RGV
Sbjct: 189 YKAKRNSWPRV--RGV 202



 Score = 74.1 bits (174), Expect = 9e-14
 Identities = 27/46 (58%), Positives = 39/46 (84%)
 Frame = +2

Query: 263 YTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLAR 400
           +TGQF++CG KA +++GN++PVG +PEGT +CN+E K GDRG +AR
Sbjct: 83  HTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIAR 128


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 19  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 129
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 130 HGYIKGVVKDIIHDPGRGAPLAVVHFR 210
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 130 HGYIKGVVKDIIHDPGRGAPLAVVHFR 210
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81085-1|CAB03112.3|  263|Caenorhabditis elegans Hypothetical
           protein F46F3.1 protein.
          Length = 263

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = -2

Query: 452 TLSIRIVSNHSGEVSRGHVPDDLYHPFSLQDCTQWYPQA*LQQASHFQLQELLSFHNKQI 273
           TLSI   +  + ++S    P+   H FS  + +  Y  A    A+H QL     F   Q+
Sbjct: 25  TLSISAPATTAAQMSYFAFPNQYPHDFSSYNTSAAYATAPYPMATHPQLANFNRFQTNQL 84

Query: 272 GL 267
            L
Sbjct: 85  NL 86


>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P   C    +A+   + E+D L     K    I Q+ R
Sbjct: 164 THPIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 223

Query: 592 SNVTGW 609
            N+T W
Sbjct: 224 DNLTLW 229


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = +3

Query: 426 IGHNPDAKRTRVKLPSGAKKVL 491
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/66 (28%), Positives = 26/66 (39%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P   C    +A+   + E+D L     K    I Q+ R
Sbjct: 164 THPIRLGLALNFSVFYYEILNTPEHACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 223

Query: 592 SNVTGW 609
            N+T W
Sbjct: 224 DNLTLW 229


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +1

Query: 67  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 192
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +1

Query: 412 TSPL*LDTILMLSVQE*SYRLEPRRFCHQGNRAWSVLLLEVDVLTNLFLKAGRAIPQVTR 591
           T P+ L   L  SV        P + C    +A+   + E+D L     K    I Q+ R
Sbjct: 165 THPIRLGLALNFSVFFYEILNAPDKACQLAKQAFDDAIAELDTLNEDSYKDSTLIMQLLR 224

Query: 592 SNVTGW 609
            N+T W
Sbjct: 225 DNLTLW 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,883,992
Number of Sequences: 27780
Number of extensions: 437026
Number of successful extensions: 1088
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1087
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)