Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30089
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical ...    30   2.0  
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>AC024838-4|AAF60819.1|   99|Caenorhabditis elegans Hypothetical
           protein Y59E9AL.5 protein.
          Length = 99

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 558 SRGRRCSPCCGETCAC 511
           SR  RCSPCC   C+C
Sbjct: 82  SRCSRCSPCCSGCCSC 97


>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
            F47A4.2 protein.
          Length = 3498

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +1

Query: 118  QRIKDEGQDEHNIRKQEEVLQESLMMVPDCQRRLIKAYTDLKTTLEQNRTSKNTRNTLPL 297
            +RI+ E +D+    K+E   QE      + + R  +     +  +EQ R S+        
Sbjct: 2676 ERIQKELEDKVRREKEEAARQEKERQEQEARMREAREAELSRQRMEQQRRSQQNPYMNQQ 2735

Query: 298  NRFSRTLNPSFQPSSH 345
             ++S+   PS+Q SS+
Sbjct: 2736 GQYSQQPPPSYQQSSY 2751


>Z50177-3|CAA90545.2|  765|Caenorhabditis elegans Hypothetical
           protein F46G10.5 protein.
          Length = 765

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 326 LGFSVLENLFSGNVFLVFFEVLFCSKVVLRSVYALI 219
           LGF VL +LF     L FF  LFC   + R V+  I
Sbjct: 190 LGFGVLLSLFVLFGVLFFFSRLFCQFTIFRIVFLWI 225


>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 208 QRRLIKAYTDLKTTLEQNRTSKNTRNTLPLNRFSRTLNPSFQPSSHN 348
           QRR ++       +  QN++ +N RN L ++R +   N S Q  S N
Sbjct: 141 QRRQLEIQEQRGDSHPQNQSRQNNRNQLNVDRIANQQNKSVQNPSRN 187


>U88314-9|AAF99881.1|  408|Caenorhabditis elegans Hypothetical
           protein C46H11.2 protein.
          Length = 408

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +3

Query: 507 INKHKFRHSKDYID 548
           I+ H +RHSKDYID
Sbjct: 157 IHSHDYRHSKDYID 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,783,310
Number of Sequences: 27780
Number of extensions: 208044
Number of successful extensions: 754
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)