Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30082
(859 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF016452-11|AAB66012.1| 443|Caenorhabditis elegans Hypothetical... 138 4e-33
Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical pr... 31 0.79
AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical ... 31 1.1
AL021472-7|CAA16303.2| 283|Caenorhabditis elegans Hypothetical ... 31 1.4
Z74031-8|CAA98451.1| 372|Caenorhabditis elegans Hypothetical pr... 29 4.2
AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear recep... 28 7.4
AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear recep... 28 7.4
AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear recep... 28 7.4
AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormo... 28 7.4
AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormo... 28 7.4
AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormo... 28 7.4
AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormo... 28 7.4
>AF016452-11|AAB66012.1| 443|Caenorhabditis elegans Hypothetical
protein T05H4.6 protein.
Length = 443
Score = 138 bits (335), Expect = 4e-33
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 7 FISADRPNVAGLILAGSADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 186
FI D+ VAGLILAGSADFKTEL QSDMFD RLQAK+IK VD++YGGENGFNQAIELAA
Sbjct: 221 FIKNDKVTVAGLILAGSADFKTELGQSDMFDQRLQAKMIKTVDIAYGGENGFNQAIELAA 280
Query: 187 ESLQNVKFIQEKKLIGRYFDEISR 258
++L +VKFIQEKKLIG YFDEIS+
Sbjct: 281 DTLASVKFIQEKKLIGGYFDEISQ 304
Score = 121 bits (292), Expect = 6e-28
Identities = 52/84 (61%), Positives = 69/84 (82%)
Frame = +3
Query: 255 QDTGKYCFGVDDTLRALELGSVETLICWENLDIQRYVLKSHATNQETILHLTPEQEKDKS 434
QDTGKY FGV DTL ALE+G++ETLICWENLDI RY +K ++ ++ +L+L P++EKDKS
Sbjct: 304 QDTGKYVFGVKDTLAALEMGAIETLICWENLDIVRYKMK-NSLGEDILLNLRPDEEKDKS 362
Query: 435 HFTDKESGVELELVECQPLLEWLA 506
HFTD E+G ++E++E PLLEW A
Sbjct: 363 HFTDSETGQDMEIIETMPLLEWFA 386
Score = 52.4 bits (120), Expect = 4e-07
Identities = 22/26 (84%), Positives = 25/26 (96%)
Frame = +2
Query: 509 NYKSFGATLEIITDKSQEGSQFVRGF 586
NYK+FGA LEI+TDKSQEG+QFVRGF
Sbjct: 388 NYKNFGAALEIVTDKSQEGAQFVRGF 413
>Z70683-1|CAA94590.1| 511|Caenorhabditis elegans Hypothetical
protein F13B12.1 protein.
Length = 511
Score = 31.5 bits (68), Expect = 0.79
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -1
Query: 736 LAPFPSKCLPSLNKSVELSVIRLVEFPR 653
LAP P KCLP+L+ + ++V++L+ PR
Sbjct: 300 LAPLPDKCLPALD--IRITVLKLLHNPR 325
>AC084152-2|AAM69073.2| 1571|Caenorhabditis elegans Hypothetical
protein Y102A11A.3 protein.
Length = 1571
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 339 ENLDIQRYVLKSHATNQETILHLTPEQEKDKSHFTDKESGVELELVECQPLLEWLAKTTS 518
E+ + + S+A ET+ ++PE K K H DK++ +LV + +E + S
Sbjct: 668 EDTSQKEHCAHSNAITPETVFDISPELGKSKQHCIDKQAEYSGKLVHLKNHIEVASVLES 727
Query: 519 RLV 527
LV
Sbjct: 728 ILV 730
>AL021472-7|CAA16303.2| 283|Caenorhabditis elegans Hypothetical
protein Y17D7B.6 protein.
Length = 283
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -1
Query: 778 KQNGNRPFLKTRGNLAPFPSKCLPSLNKSVELSVIRLVEFPRS-VEAASDWKVQLCNGGD 602
++N N ++ + N++ P+ P+ ++LSV V S A++ WK+ C G
Sbjct: 83 EENSNNAYVAIKTNISNIPNGTCPASYNDLKLSVTSAVGEKNSWTRASTGWKMVNCRTGW 142
Query: 601 RR 596
+R
Sbjct: 143 KR 144
>Z74031-8|CAA98451.1| 372|Caenorhabditis elegans Hypothetical
protein F32D8.8 protein.
Length = 372
Score = 29.1 bits (62), Expect = 4.2
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 210 KLDILQGFRSQLYSLIETVFAS--I*YVHQFYDLGLETRIKHIGLGQF 73
KLDI + FR ++YS+ FA Y F + I++IGLGQ+
Sbjct: 230 KLDIEERFRDRVYSITPVEFAMNFKNYSESFDFAAAFSSIEYIGLGQY 277
>AY305835-1|AAR11980.1| 618|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 618
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 55 SADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 186
SA K ELS F+P + + S G GFNQ + A
Sbjct: 239 SAGVKRELSPDAEFEPSAKVSTVSEPSTSSGPSGGFNQNVSSPA 282
>AF273820-1|AAG15169.1| 624|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 624
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 55 SADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 186
SA K ELS F+P + + S G GFNQ + A
Sbjct: 243 SAGVKRELSPDAEFEPSAKVSTVSEPSTSSGPSGGFNQNVSSPA 286
>AF273819-1|AAG15168.1| 619|Caenorhabditis elegans nuclear receptor
NHR-66 protein.
Length = 619
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 55 SADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 186
SA K ELS F+P + + S G GFNQ + A
Sbjct: 238 SAGVKRELSPDAEFEPSAKVSTVSEPSTSSGPSGGFNQNVSSPA 281
>AF047660-8|AAM54167.1| 526|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform b protein.
Length = 526
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 55 SADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 186
SA K ELS F+P + + S G GFNQ + A
Sbjct: 145 SAGVKRELSPDAEFEPSAKVSTVSEPSTSSGPSGGFNQNVSSPA 188
>AF047660-7|AAM54166.1| 577|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform a protein.
Length = 577
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 55 SADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 186
SA K ELS F+P + + S G GFNQ + A
Sbjct: 196 SAGVKRELSPDAEFEPSAKVSTVSEPSTSSGPSGGFNQNVSSPA 239
>AF047660-6|AAV34786.1| 659|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform d protein.
Length = 659
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 55 SADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 186
SA K ELS F+P + + S G GFNQ + A
Sbjct: 278 SAGVKRELSPDAEFEPSAKVSTVSEPSTSSGPSGGFNQNVSSPA 321
>AF047660-5|AAM54168.1| 733|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 66, isoform c protein.
Length = 733
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = +1
Query: 55 SADFKTELSQSDMFDPRLQAKIIKLVDVSYGGENGFNQAIELAA 186
SA K ELS F+P + + S G GFNQ + A
Sbjct: 352 SAGVKRELSPDAEFEPSAKVSTVSEPSTSSGPSGGFNQNVSSPA 395
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,478,336
Number of Sequences: 27780
Number of extensions: 483595
Number of successful extensions: 1406
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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