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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30048
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin p...    28   5.8  
AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin p...    28   5.8  

>U00025-4|AAN65312.1|  606|Caenorhabditis elegans Hypothetical
           protein PAR2.4b protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 56  VSLAMPVAEEKDVVPAQPIL 115
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>U00025-3|AAA50619.1|  804|Caenorhabditis elegans Hypothetical
           protein PAR2.4a protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 56  VSLAMPVAEEKDVVPAQPIL 115
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


>AB110824-1|BAD80739.1|  606|Caenorhabditis elegans chondroitin
           polymerizing factor-S protein.
          Length = 606

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 56  VSLAMPVAEEKDVVPAQPIL 115
           V++ +PVA EKDV+PA+ +L
Sbjct: 317 VTVVIPVASEKDVLPARKLL 336


>AB110823-1|BAD80738.1|  804|Caenorhabditis elegans chondroitin
           polymerizing factor protein.
          Length = 804

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +2

Query: 56  VSLAMPVAEEKDVVPAQPIL 115
           V++ +PVA EKDV+PA+ +L
Sbjct: 515 VTVVIPVASEKDVLPARKLL 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,908,755
Number of Sequences: 27780
Number of extensions: 242165
Number of successful extensions: 526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 525
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).