Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00007
         (575 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical p...    75   3e-14
Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein...    29   3.1  
AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein...    29   3.1  
AC024810-13|AAK68518.1|  405|Caenorhabditis elegans Feminization...    29   3.1  
AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization...    29   3.1  
Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z83731-4|CAB06021.2|  471|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AM498742-1|CAM58448.1|  471|Caenorhabditis elegans MAP kinase pr...    28   5.5  
AC006692-8|AAF39973.1|  431|Caenorhabditis elegans Hypothetical ...    28   5.5  
U23518-2|AAC70884.4|  496|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical...    27   7.2  

>Z80215-15|CAJ30222.1|   99|Caenorhabditis elegans Hypothetical
           protein C36B1.14 protein.
          Length = 99

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 37/91 (40%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
 Frame = +1

Query: 235 EVRKEIGRVITPDPW--KAGARNTVESGGRVVGENKALTAKKGRFNPYTSTFQQCKICRT 408
           +  K++ +++  DP+  K   RN   SG + V     L   + +    T    +CK+C+ 
Sbjct: 5   DCEKKLTKIVGVDPYRNKKVNRNADGSGPKTVTTKNRLIGVQKKA---TIVGAKCKLCKM 61

Query: 409 KVHQVGSHYCQACAYKKGICAMCGKKILDTK 501
            +HQ GSHYC  CAY+KGICAMCGKKI +TK
Sbjct: 62  LIHQPGSHYCSTCAYQKGICAMCGKKIQNTK 92


>Z75549-3|CAA99915.1|  301|Caenorhabditis elegans Hypothetical
           protein T19C4.3 protein.
          Length = 301

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = -3

Query: 315 SAGLHGIPSSSLPRVRCYYSANFFSHFSQTIFVLFLTNLTSLY*YEILLNCCFD*IICRL 136
           S  L+GI   ++ R R  + ++FF+ F    F+   T    L+   +    CFD ++  +
Sbjct: 18  SVALYGITIYTILRCRKTFDSSFFNLFVYDGFMNLFTYFVGLFMLRLTSITCFDCLMVPV 77

Query: 135 Y 133
           Y
Sbjct: 78  Y 78


>AJ297847-1|CAC16732.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 358 RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 489
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>AJ297846-1|CAC16731.1|  619|Caenorhabditis elegans FOG-1 protein
           protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 358 RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 489
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>AC024810-13|AAK68518.1|  405|Caenorhabditis elegans Feminization of
           germline protein1, isoform a protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 358 RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 489
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 330 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 373


>AC024810-12|AAK68519.1|  619|Caenorhabditis elegans Feminization of
           germline protein1, isoform b protein.
          Length = 619

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 358 RFNPYTSTFQQCKICRTKVHQVGSHYCQACAYKKGICAMCGKKI 489
           R NP     Q  ++ RT V+   S YC+    ++  C  C  K+
Sbjct: 544 RMNPEAKLQQFLRMKRTNVYSNKSAYCKEAPCRQYYCPSCSNKL 587


>Z19154-9|CAA79552.2|  559|Caenorhabditis elegans Hypothetical
           protein C40H1.1 protein.
          Length = 559

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
 Frame = +1

Query: 313 GRVVGENKALTAKKGRFNPYTSTFQQCKICRTKV--HQVGSHYCQACAYKKGICAMCGKK 486
           GR V  N A   K+    PY    Q C  C  ++  H    ++C   +  +  C  C  +
Sbjct: 426 GRFVQVNHAENNKRVEIKPYVMEEQYCDECEGRLCKHNYAPYFCGHASCLQYYCEGCWDR 485

Query: 487 ILDTKN 504
           +   KN
Sbjct: 486 MHIGKN 491


>Z83731-4|CAB06021.2|  471|Caenorhabditis elegans Hypothetical
           protein M04C9.5 protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 248 SFRTSHKP-FLFCFLLT*RACISTKF 174
           SF +SHK  FLF FLL   AC+S+++
Sbjct: 445 SFCSSHKSLFLFVFLLPFGACLSSQY 470


>U70857-7|AAB09170.1|  208|Caenorhabditis elegans Hypothetical
           protein C10G8.2 protein.
          Length = 208

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +1

Query: 385 QQC---KICRTKVHQVGSHYCQACAYKKGICAMCGKKILD 495
           QQC   K C  K  ++ SHYC     +KGIC  C  K L+
Sbjct: 96  QQCASHKDCNWKTSKINSHYCT----RKGIC--CQSKDLE 129


>AM498742-1|CAM58448.1|  471|Caenorhabditis elegans MAP kinase
           protein.
          Length = 471

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
 Frame = -1

Query: 248 SFRTSHKP-FLFCFLLT*RACISTKF 174
           SF +SHK  FLF FLL   AC+S+++
Sbjct: 445 SFCSSHKSLFLFVFLLPFGACLSSQY 470


>AC006692-8|AAF39973.1|  431|Caenorhabditis elegans Hypothetical
           protein T28F12.1 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 350 KKDDLIRTLPHFNSAKSAERKYTRSDHITAKLVHTKRVYVP 472
           K +DLI+   H N   + ++  TRSD    K +   ++Y+P
Sbjct: 257 KPEDLIKLQQHMNRMDAQQKSDTRSD----KFIKRGKIYIP 293


>U23518-2|AAC70884.4|  496|Caenorhabditis elegans Hypothetical
           protein F21D12.3 protein.
          Length = 496

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = -1

Query: 305 STVFLAPAFQGSGVITLPISFRTSHKPFLFCFLLT 201
           + +F+     G GV+ +P++F+ S  P     +LT
Sbjct: 49  AAIFIIADMVGGGVVAMPVAFKLSGLPMGILIMLT 83


>AC024817-27|AAY86296.1|  636|Caenorhabditis elegans Hypothetical
           protein Y54G2A.40 protein.
          Length = 636

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 436 CQACAYKKGICAMCGKKILDTKNYSRAQL 522
           C  C  K   C +C K ++ T+NY+  Q+
Sbjct: 38  CTQCFNKYKNCPICAKPLVRTENYAARQI 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,309,590
Number of Sequences: 27780
Number of extensions: 257778
Number of successful extensions: 607
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)