Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= tesV0226.Seq
(568 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical pr... 130 9e-31
U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin prote... 130 9e-31
U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin prote... 130 9e-31
M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin p... 130 9e-31
L31492-1|AAC37252.1| 128|Caenorhabditis elegans ubiquitin/ribos... 130 9e-31
Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical pr... 93 2e-19
AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical ... 79 2e-15
M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein ( C.ele... 70 1e-12
L16530-1|AAA28161.1| 163|Caenorhabditis elegans ubiquitin-like:... 56 2e-08
AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-lik... 56 2e-08
U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical pr... 47 8e-06
AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical ... 45 3e-05
AF040643-4|AAB94965.1| 110|Caenorhabditis elegans Hypothetical ... 40 0.001
U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical pr... 40 0.002
AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-lik... 39 0.003
Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical pr... 36 0.027
U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical p... 35 0.035
U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical pr... 35 0.035
Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical pr... 35 0.047
U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical pr... 35 0.047
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 33 0.19
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 33 0.19
AF099917-6|AAC68780.1| 264|Caenorhabditis elegans Hypothetical ... 33 0.19
L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical pr... 31 0.58
L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical pr... 31 0.58
Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical pr... 29 3.1
AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical... 28 5.4
AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical ... 28 5.4
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 28 5.4
AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical ... 27 7.1
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 27 9.4
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 27 9.4
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 27 9.4
>Z82083-1|CAB04967.1| 128|Caenorhabditis elegans Hypothetical
protein ZK1010.1 protein.
Length = 128
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
>U23172-2|AAM22069.2| 538|Caenorhabditis elegans Ubiquitin protein
1, isoform c protein.
Length = 538
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 365 IQKESTLHLV 374
Score = 127 bits (307), Expect = 5e-30
Identities = 63/70 (90%), Positives = 64/70 (91%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTL GKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 441 IQKESTLHLV 450
Score = 88.6 bits (210), Expect = 3e-18
Identities = 43/47 (91%), Positives = 44/47 (93%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAG 152
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAG
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAG 503
>U23172-1|AAC46525.1| 838|Caenorhabditis elegans Ubiquitin protein
1, isoform a protein.
Length = 838
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 365 IQKESTLHLV 374
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 517 IQKESTLHLV 526
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 593 IQKESTLHLV 602
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 669 IQKESTLHLV 678
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 745 IQKESTLHLV 754
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 821 IQKESTLHLV 830
Score = 127 bits (307), Expect = 5e-30
Identities = 63/70 (90%), Positives = 64/70 (91%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTL GKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 381 MQIFVKTLIGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 441 IQKESTLHLV 450
>M23433-1|AAA28154.1| 838|Caenorhabditis elegans polyubiquitin
protein.
Length = 838
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 77 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 137 IQKESTLHLV 146
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 153 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 213 IQKESTLHLV 222
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 229 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 289 IQKESTLHLV 298
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 305 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 365 IQKESTLHLV 374
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 381 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 441 IQKESTLHLV 450
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 457 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 517 IQKESTLHLV 526
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 533 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 593 IQKESTLHLV 602
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 609 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 669 IQKESTLHLV 678
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 685 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 744
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 745 IQKESTLHLV 754
Score = 128 bits (310), Expect = 2e-30
Identities = 63/70 (90%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 761 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 820
Query: 192 IQXESTLHLV 221
IQ +STLHLV
Sbjct: 821 IQKQSTLHLV 830
>L31492-1|AAC37252.1| 128|Caenorhabditis elegans
ubiquitin/ribosomal fusion protein protein.
Length = 128
Score = 130 bits (313), Expect = 9e-31
Identities = 64/70 (91%), Positives = 65/70 (92%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIPP+QQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 192 IQXESTLHLV 221
IQ ESTLHLV
Sbjct: 61 IQKESTLHLV 70
>Z78420-1|CAB01708.1| 77|Caenorhabditis elegans Hypothetical
protein F45H11.2 protein.
Length = 77
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/70 (58%), Positives = 53/70 (75%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYX 191
M VKTLTGK I L++EP+D +E +K K+++KEGIPP QQRLIFAGKQ+ D +T +DY
Sbjct: 1 MLIKVKTLTGKEIELDIEPNDRVERIKEKVEEKEGIPPPQQRLIFAGKQMNDDKTAADYK 60
Query: 192 IQXESTLHLV 221
+ S LHLV
Sbjct: 61 VLGGSVLHLV 70
>AF040645-8|AAB94982.1| 292|Caenorhabditis elegans Hypothetical
protein F52C6.4 protein.
Length = 292
Score = 79.4 bits (187), Expect = 2e-15
Identities = 36/71 (50%), Positives = 50/71 (70%)
Frame = +3
Query: 9 KMQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 188
K+ VKTL GKTI + ++ +DT+E +K K+Q+K G+PP+QQRLIF QLE+ R L Y
Sbjct: 160 KLTVSVKTLFGKTIPISIKNTDTVETLKFKVQNKHGVPPDQQRLIFGRAQLENDRALFAY 219
Query: 189 XIQXESTLHLV 221
I+ E +HLV
Sbjct: 220 NIRDEDIIHLV 230
Score = 35.5 bits (78), Expect = 0.027
Identities = 22/62 (35%), Positives = 34/62 (54%)
Frame = +3
Query: 33 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTL 212
+TG IT VE SD I+++ K+ + + P ++ +D RT+SDY I+ STL
Sbjct: 98 VTGDPIT--VEASDAIKDLNFKVAEAQRKPHQPSNIVLC----KDQRTISDYNIKNGSTL 151
Query: 213 HL 218
L
Sbjct: 152 RL 153
Score = 33.1 bits (72), Expect = 0.14
Identities = 17/36 (47%), Positives = 24/36 (66%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 119
M VKT TGKTIT+E +NVK +++DK+G+
Sbjct: 59 MLLSVKTSTGKTITVEAP-----KNVKTEVRDKQGV 89
>M21321-1|AAA28153.1| 37|Caenorhabditis elegans protein (
C.elegans ubiquitin A(UbiA) gene, 5' end. ).
Length = 37
Score = 69.7 bits (163), Expect = 1e-12
Identities = 34/37 (91%), Positives = 34/37 (91%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 122
MQ VKTLTGKTITLEVE SDTIENVKAKIQDKEGIP
Sbjct: 1 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIP 37
>L16530-1|AAA28161.1| 163|Caenorhabditis elegans
ubiquitin-like:ribosomal proteinfusion protein protein.
Length = 163
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/141 (27%), Positives = 59/141 (41%)
Frame = +3
Query: 24 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXE 203
VKTL +T+ LEV ++ + ++K KI+ EGIP +QRL +AG+QLED SD I E
Sbjct: 4 VKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSE 58
Query: 204 STLHLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXN*PSSGFXXXXXXXXXXXXXASXRXE 383
+T+++ + +
Sbjct: 59 ATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQP 118
Query: 384 QCXAGVFXAVMXDRNYCXKCH 446
C GVF A +R+YC +CH
Sbjct: 119 SCGGGVFMAQHANRHYCGRCH 139
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 251 QEKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKXHRLXRE 370
++K Y+TP LAVL++YK+DENGK RL +E
Sbjct: 75 KKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKE 114
>AC006651-4|AAF39865.1| 163|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform a protein.
Length = 163
Score = 56.0 bits (129), Expect = 2e-08
Identities = 39/141 (27%), Positives = 59/141 (41%)
Frame = +3
Query: 24 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXE 203
VKTL +T+ LEV ++ + ++K KI+ EGIP +QRL +AG+QLED SD I E
Sbjct: 4 VKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAGRQLED----SDCGIDSE 58
Query: 204 STLHLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXN*PSSGFXXXXXXXXXXXXXASXRXE 383
+T+++ + +
Sbjct: 59 ATIYVNLELLGGAKKRKKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKECQQP 118
Query: 384 QCXAGVFXAVMXDRNYCXKCH 446
C GVF A +R+YC +CH
Sbjct: 119 SCGGGVFMAQHANRHYCGRCH 139
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 251 QEKNYSTPXXXXXXXXXXXLAVLRFYKVDENGKXHRLXRE 370
++K Y+TP LAVL++YK+DENGK RL +E
Sbjct: 75 KKKVYTTPKKNKRKPKKVKLAVLKYYKIDENGKITRLRKE 114
>U80452-4|AAB37860.1| 226|Caenorhabditis elegans Hypothetical
protein C16C8.4 protein.
Length = 226
Score = 47.2 bits (107), Expect = 8e-06
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +3
Query: 9 KMQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 188
+ Q VK L G + ++ DT+ ++K I+ + IP + L F+GK+LED ++ DY
Sbjct: 153 EFQIFVKVL-GVSYAFKIHREDTVFDIKNDIEHRHDIPQHSYWLSFSGKRLEDHCSIGDY 211
Query: 189 XIQXESTL 212
IQ ST+
Sbjct: 212 NIQKSSTI 219
>AF040645-9|AAB94972.2| 197|Caenorhabditis elegans Hypothetical
protein F52C6.3 protein.
Length = 197
Score = 45.2 bits (102), Expect = 3e-05
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Frame = +3
Query: 39 GKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLE---DGRTLSDYXIQXEST 209
G+T TL+ SDT+ +VKAKI +K I PN Q+L+ L+ D TL D + ST
Sbjct: 111 GRTCTLDTSASDTMASVKAKIWEKLRILPNTQKLLLENWDLDLFSDHSTLFDNSFENGST 170
Query: 210 LHL 218
L L
Sbjct: 171 LRL 173
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGI 119
M +KT TGK IT+E S VK +++DK+G+
Sbjct: 1 MLLSIKTSTGKNITVEAPKS-----VKTEVRDKQGV 31
>AF040643-4|AAB94965.1| 110|Caenorhabditis elegans Hypothetical
protein F14D2.11 protein.
Length = 110
Score = 39.9 bits (89), Expect = 0.001
Identities = 26/70 (37%), Positives = 34/70 (48%)
Frame = +3
Query: 9 KMQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 188
K Q V+ L GKT TL V SDT+E K ++ R+ + GK L D T +Y
Sbjct: 42 KFQYFVR-LNGKTRTLNVNASDTVEQGKMQLCHN----ARSTRMSYGGKPLSDQITFGEY 96
Query: 189 XIQXESTLHL 218
I ST+ L
Sbjct: 97 NISNNSTMDL 106
>U80452-8|AAB37855.1| 244|Caenorhabditis elegans Hypothetical
protein C16C8.13 protein.
Length = 244
Score = 39.5 bits (88), Expect = 0.002
Identities = 24/61 (39%), Positives = 30/61 (49%)
Frame = +3
Query: 36 TGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTLH 215
+G L V SDTI VK I + + R++ K LED TL+ Y IQ STL
Sbjct: 181 SGNYRNLWVRGSDTIRQVKLTINSLANVDISSFRMVLRDKVLEDDHTLAYYNIQEGSTLG 240
Query: 216 L 218
L
Sbjct: 241 L 241
>AC006651-5|AAM48542.1| 47|Caenorhabditis elegans Ubiquitin-like
family protein 1,isoform b protein.
Length = 47
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/44 (43%), Positives = 30/44 (68%)
Frame = +3
Query: 24 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGK 155
VKTL +T+ LEV ++ + ++K KI+ EGIP +QRL +A +
Sbjct: 4 VKTLH-RTLFLEVAANEDVLSIKQKIEAAEGIPAEEQRLCYAAR 46
>Z32681-5|CAA83606.1| 341|Caenorhabditis elegans Hypothetical
protein F56F3.4 protein.
Length = 341
Score = 35.5 bits (78), Expect = 0.027
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Frame = +3
Query: 42 KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED-GRTLSDYXIQXESTL 212
K I +E++ +T+ +K +I+ + + N+Q L+F G +L+D +T++D I ++ +
Sbjct: 32 KQIVVEMKDKETVSILKNRIEQETEVLTNRQVLLFKGMELKDNNKTMTDCGINSDAKI 89
>U80452-10|AAB37853.1| 214|Caenorhabditis elegans Hypothetical
protein C16C8.11 protein.
Length = 214
Score = 35.1 bits (77), Expect = 0.035
Identities = 16/53 (30%), Positives = 30/53 (56%)
Frame = +3
Query: 30 TLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDY 188
++ G+ ++ +++E +K KI+ + GIP + L GK L D + L+DY
Sbjct: 149 SMPGRLFSIGANKMESVEQLKMKIECQTGIPRTKFWLRLHGKPLYDDKKLADY 201
>U80452-6|AAB37858.1| 592|Caenorhabditis elegans Hypothetical
protein C16C8.16 protein.
Length = 592
Score = 35.1 bits (77), Expect = 0.035
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 54 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTLHL 218
L V SDTI ++K +I + + R++ GK LED +L+ Y IQ + + L
Sbjct: 210 LRVCGSDTIRHIKLRINSLAKVDISSFRMVLRGKLLEDHHSLAYYNIQEGALIWL 264
>Z69904-3|CAA93780.1| 372|Caenorhabditis elegans Hypothetical
protein ZK20.3 protein.
Length = 372
Score = 34.7 bits (76), Expect = 0.047
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +3
Query: 27 KTLTGKTITLEVEPSDTIENVKAKIQDKEG--IPPNQQRLIFAGKQLED 167
+TLT LE+ TI VKA + ++G P Q+LI+ GK L+D
Sbjct: 57 RTLTQVNFNLELNEDQTIAEVKALVASEKGDDYAPELQKLIYNGKILDD 105
>U80452-7|AAB37856.1| 233|Caenorhabditis elegans Hypothetical
protein C16C8.14 protein.
Length = 233
Score = 34.7 bits (76), Expect = 0.047
Identities = 21/53 (39%), Positives = 26/53 (49%)
Frame = +3
Query: 54 LEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTL 212
L V SDTI +K +I GI R K LED TL+ Y I+ ST+
Sbjct: 176 LRVCGSDTIRQIKPRINSLAGIDTISFRTFCDDKFLEDDHTLAHYNIREGSTI 228
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/62 (20%), Positives = 34/62 (54%)
Frame = +3
Query: 33 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTL 212
+ G + ++ + + +K +IQD+ G+P +Q+L+ G ++D + + Y + + +
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAI 643
Query: 213 HL 218
+L
Sbjct: 644 YL 645
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/62 (20%), Positives = 34/62 (54%)
Frame = +3
Query: 33 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTL 212
+ G + ++ + + +K +IQD+ G+P +Q+L+ G ++D + + Y + + +
Sbjct: 584 MDGSIVQFTIQVTAPMSELKQQIQDRYGMPVGKQKLMSDGLFVKDNMSSAFYNLADRTAI 643
Query: 213 HL 218
+L
Sbjct: 644 YL 645
>AF099917-6|AAC68780.1| 264|Caenorhabditis elegans Hypothetical
protein F54D10.7 protein.
Length = 264
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +3
Query: 33 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXESTL 212
L G I +E++ DTI V + G+ ++QRL+ K+L+ +TL + I+ S +
Sbjct: 189 LHGSRIPMELDSLDTIYTVGMALLKHGGLALHRQRLMLNDKELQYNQTLEEAGIKDGSVI 248
>L16621-4|AAO12390.1| 1595|Caenorhabditis elegans Hypothetical
protein ZK688.5b protein.
Length = 1595
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 24 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXE 203
+KTL + T+ + DTI+++ + + I QR+I G+ L +T+ I
Sbjct: 25 LKTLDDREATVTIGLQDTIQSLIDLGRREMNIQSGFQRVIAGGRVLNSTQTVQAAGISDG 84
Query: 204 STLHLV 221
T+HLV
Sbjct: 85 QTVHLV 90
>L16621-3|AAL00883.1| 1620|Caenorhabditis elegans Hypothetical
protein ZK688.5a protein.
Length = 1620
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 24 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLEDGRTLSDYXIQXE 203
+KTL + T+ + DTI+++ + + I QR+I G+ L +T+ I
Sbjct: 25 LKTLDDREATVTIGLQDTIQSLIDLGRREMNIQSGFQRVIAGGRVLNSTQTVQAAGISDG 84
Query: 204 STLHLV 221
T+HLV
Sbjct: 85 QTVHLV 90
>Z92834-5|CAB07390.1| 402|Caenorhabditis elegans Hypothetical
protein F39B2.10 protein.
Length = 402
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 24 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 122
+ TL G+TI V P + I + K+ EG+P
Sbjct: 279 ISTLDGRTIFYRVLPGEVIAHADVKVIHNEGMP 311
>AF040645-10|AAB94971.2| 110|Caenorhabditis elegans Hypothetical
protein F52C6.2 protein.
Length = 110
Score = 27.9 bits (59), Expect = 5.4
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQ-LEDGRTLSDY 188
M +KT TGKTIT+E S VK +++ K+G+ AG Q +E T+ D
Sbjct: 1 MLLSIKTSTGKTITVEAPKS-----VKTEVRYKQGVVFAVSYDKDAGNQIIEMEDTVQDV 55
Query: 189 XIQ 197
IQ
Sbjct: 56 KIQ 58
>AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical
protein F27B3.5 protein.
Length = 787
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 277 EDQAQXEXGQTSRPQVLQGRRER*XPPSXARVHGXSSAAP 396
ED+ + TS PQV++ +RE P S ++ G +S P
Sbjct: 355 EDKENMKVKDTSNPQVMKNQREN--PKSISKPEGNNSDTP 392
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 277 EDQAQXEXGQTSRPQVLQGRRER*XPPSXARVHGXSSAAP 396
ED+ + TS PQV++ +RE P S ++ G +S P
Sbjct: 562 EDKENMKVKDTSNPQVMKNQREN--PKSISKPEGNNSDTP 599
>AF003130-4|AAB54126.1| 1043|Caenorhabditis elegans Hypothetical
protein F55A12.8 protein.
Length = 1043
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 42 KTITLEVEPSDTIENVKAKIQDKEGIPPNQQRL 140
KT+ +V+ T+E ++ +I+ + +PP QRL
Sbjct: 664 KTVIKQVKDGHTVELLEERIEPRADLPPLLQRL 696
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein
363, isoform b protein.
Length = 2692
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFA 149
M +TLTG I + EP + KA +Q E P QR++ A
Sbjct: 539 MASVYQTLTGSLIPPKSEPIGRPASPKAILQKAETDPKELQRIVLA 584
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein
363, isoform a protein.
Length = 2695
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFA 149
M +TLTG I + EP + KA +Q E P QR++ A
Sbjct: 539 MASVYQTLTGSLIPPKSEPIGRPASPKAILQKAETDPKELQRIVLA 584
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical protein
F48E3.3 protein.
Length = 1493
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/52 (21%), Positives = 28/52 (53%)
Frame = +3
Query: 12 MQXXVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPNQQRLIFAGKQLED 167
+Q + + TGK++ + VE + +E D+EG+ + L+ + ++ ++
Sbjct: 1149 LQVVIDSFTGKSVRVRVEKREGMEERNLLSDDEEGVWSSLSNLVSSKEKTQE 1200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,781,567
Number of Sequences: 27780
Number of extensions: 161019
Number of successful extensions: 392
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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