Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0222.Seq
         (819 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical pr...    31   0.99 
U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical ...    28   7.0  
AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical ...    28   7.0  

>U28992-6|AAO38603.1| 1163|Caenorhabditis elegans Hypothetical
           protein T05C1.4b protein.
          Length = 1163

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 395 CEFIPSYINLGTHNTFGQQCMSSAVSLVKL*TSVTISCPLLHSQTFHVISRVLKVFQLLK 216
           C  +  Y+N+ T+N    Q    A S+++    V IS   LH Q   +  + L V QL+ 
Sbjct: 185 CHVLVHYLNVKTNNKIDDQAEEIARSMIE--NKVFISLSQLHDQLSPIFLQTLNVNQLVA 242

Query: 215 HSISH 201
               H
Sbjct: 243 EINEH 247


>U28992-5|AAO38602.1| 1185|Caenorhabditis elegans Hypothetical
           protein T05C1.4a protein.
          Length = 1185

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 19/65 (29%), Positives = 29/65 (44%)
 Frame = -2

Query: 395 CEFIPSYINLGTHNTFGQQCMSSAVSLVKL*TSVTISCPLLHSQTFHVISRVLKVFQLLK 216
           C  +  Y+N+ T+N    Q    A S+++    V IS   LH Q   +  + L V QL+ 
Sbjct: 185 CHVLVHYLNVKTNNKIDDQAEEIARSMIE--NKVFISLSQLHDQLSPIFLQTLNVNQLVA 242

Query: 215 HSISH 201
               H
Sbjct: 243 EINEH 247


>AF039039-1|AAB94180.2|  653|Caenorhabditis elegans Hypothetical
           protein T08B1.6 protein.
          Length = 653

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 739 GLFIKWSGHIKWKGKLENKYFLF 671
           G+F  W+   KWK  LE+ YF F
Sbjct: 247 GIFTSWTIAYKWKFGLEDTYFSF 269


>AC006607-7|AAL00855.1|  789|Caenorhabditis elegans Hypothetical
           protein C09E7.9 protein.
          Length = 789

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -2

Query: 260 FHVISRVLKVFQLLKHSISHCIPRHSN 180
           FH++  VL++FQ +KH   H +  + N
Sbjct: 52  FHIMISVLRIFQKVKHDTWHLVTDYVN 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,917,465
Number of Sequences: 27780
Number of extensions: 319523
Number of successful extensions: 688
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)