Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesV0214.Seq
         (599 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical ...    28   4.4  
AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AF026212-1|AAF99971.1|  807|Caenorhabditis elegans Hypothetical
           protein F52G3.3 protein.
          Length = 807

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/19 (63%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
 Frame = -2

Query: 298 GNTKSILRLQHLLPHH-YH 245
           GN KS+ RL+HLLP+  YH
Sbjct: 615 GNVKSVKRLRHLLPNRGYH 633


>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 360 ILHT*GFAERFVDQDKQANKE 298
           + HT G A RFVDQ+K  N E
Sbjct: 266 LCHTGGLAYRFVDQEKYNNSE 286


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = -2

Query: 223 CQLCIKKCS*QSTQHVDLLVALISPLMERYAAKSISKKNAVSQKC 89
           C +C+KKC   + + ++L   L +    RY+  S       + +C
Sbjct: 69  CGICVKKCPYDAIKIINLPANLANETTHRYSQNSFKLHRLPTPRC 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,147,416
Number of Sequences: 27780
Number of extensions: 232471
Number of successful extensions: 578
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)