Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0100
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical pr...    31   0.93 
U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin fam...    28   6.6  
Z83109-1|CAB05513.1|  339|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U41534-3|AAB47595.1| 1119|Caenorhabditis elegans Hypothetical
           protein C16A3.7 protein.
          Length = 1119

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +3

Query: 261 RCH--PTPPSCQNPEKCLKKTTSKGVRPCRSAVSIMST 368
           +CH  P PP   N     +  TSKGV PC   + IM T
Sbjct: 512 KCHEGPCPPCNLNTSVICRCGTSKGVIPCDEYLQIMKT 549


>U28740-6|AAA68322.4|  317|Caenorhabditis elegans Tetraspanin family
           protein 11 protein.
          Length = 317

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 85  TIVSFPRSFFFQNIFSDIFYVTLKIY 8
           TI +F  S  F+N F DI + +LK+Y
Sbjct: 130 TIYAFLHSHMFENDFRDILHSSLKMY 155


>Z83109-1|CAB05513.1|  339|Caenorhabditis elegans Hypothetical
           protein F44G3.1 protein.
          Length = 339

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 313 KQLRKEFDLVGVLYP*CQQGQKPNVLVAGN 402
           K L   F ++G++Y  C    KPNV ++ N
Sbjct: 44  KYLMFSFSVLGIIYSCCDFWSKPNVYISKN 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,810,587
Number of Sequences: 27780
Number of extensions: 281582
Number of successful extensions: 759
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)