Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= tesS0049
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical pr...    30   0.81 
Z69637-2|CAA93466.1|  199|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical pr...    26   10.0 
U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf (diva...    26   10.0 

>Z78059-1|CAH04725.2|  348|Caenorhabditis elegans Hypothetical
           protein C34B4.5 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 0.81
 Identities = 21/66 (31%), Positives = 33/66 (50%)
 Frame = +2

Query: 32  YVYKVFILNTILLFFRTLSCKYL*LFRYFSLKMDMNNPPNQSYWFVLREDXSNVILSTNN 211
           +V  +F+L+T+     T S   + +F +  LK      P + +WF+L+   S  ILST N
Sbjct: 43  FVILLFVLSTVTATLLTASFLIMAVFLWNHLK------PMKFFWFLLQLTISAFILSTLN 96

Query: 212 FVNQNP 229
            V   P
Sbjct: 97  LVFNVP 102


>Z69637-2|CAA93466.1|  199|Caenorhabditis elegans Hypothetical
           protein F35G2.2 protein.
          Length = 199

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -1

Query: 141 LFISIFNEKYLNNYKYLHDSVLKNRRIVFSMKTL 40
           LF+    EK+ +N KY  + +  +RR++ + + L
Sbjct: 17  LFVCDLQEKFASNIKYFPEIITTSRRLIDAARIL 50


>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 311 IIGGXFMWINCLF 273
           +IGG F+++NCLF
Sbjct: 205 VIGGVFLFVNCLF 217


>U41538-2|AAG00010.1|  997|Caenorhabditis elegans Hypothetical
           protein R04E5.8a protein.
          Length = 997

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 110 RYFSLKMDMNNPPNQSYWFVLREDXSN 190
           + FS+  +M+ PP   YW +  E  SN
Sbjct: 304 KQFSIPHNMDRPPAPRYWIIDNEVRSN 330


>U23525-5|AAC46568.1|  465|Caenorhabditis elegans Yeast smf
           (divalent cation transporter)homolog protein 2 protein.
          Length = 465

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 135 ISIFNEKYLNNYKYLHDSVLKNRRIVFSMKT 43
           ISIF    + +  YLH +++K+R++  S KT
Sbjct: 178 ISIFGAVIMPHNFYLHSALVKSRKVDRSSKT 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,032,025
Number of Sequences: 27780
Number of extensions: 138939
Number of successful extensions: 250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 244
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)