Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0245.Seq
         (906 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr...    30   2.6  
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p...    30   2.6  
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp...    30   2.6  

>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
            K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 903  PLGAPGFXGFRAPFAPKKP*XGXMVPRRGPSPG 805
            P+G P + G    F P  P    M PR GP+ G
Sbjct: 1238 PMGPPAYPGTPGSFPPTTPTYPGMTPRPGPNFG 1270


>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
            protein K08F8.6 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 903  PLGAPGFXGFRAPFAPKKP*XGXMVPRRGPSPG 805
            P+G P + G    F P  P    M PR GP+ G
Sbjct: 1238 PMGPPAYPGTPGSFPPTTPTYPGMTPRPGPNFG 1270


>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
            subunit Med13 protein.
          Length = 2862

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 903  PLGAPGFXGFRAPFAPKKP*XGXMVPRRGPSPG 805
            P+G P + G    F P  P    M PR GP+ G
Sbjct: 1238 PMGPPAYPGTPGSFPPTTPTYPGMTPRPGPNFG 1270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,090,856
Number of Sequences: 27780
Number of extensions: 304388
Number of successful extensions: 611
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)