BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0227.Seq (928 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 29 3.6 AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical ... 29 6.2 Z50016-14|CAI06050.2| 177|Caenorhabditis elegans Hypothetical p... 28 8.2 >AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding protein homologprotein 1, isoform d protein. Length = 679 Score = 29.5 bits (63), Expect = 3.6 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 1/80 (1%) Frame = +3 Query: 45 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI-ES**GRHLKDASPVLDHAICKSYP 221 +P+ V+ ++ PS +S + VTT V+ TTI S + V A + P Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTITTSTPPSTTSPTTTVTPVATSSATP 618 Query: 222 DSSKLTTSDARPPSIGFDLI 281 SK TT+ RP + +L+ Sbjct: 619 KPSKRTTT-RRPMTASKELV 637 >AF038611-7|AAB92040.1| 466|Caenorhabditis elegans Hypothetical protein E04A4.6 protein. Length = 466 Score = 28.7 bits (61), Expect = 6.2 Identities = 14/46 (30%), Positives = 25/46 (54%) Frame = -1 Query: 442 KSISCRIRHEGDTANGSIYQFWFLRSXSVXWITVVILELIHAIRTL 305 K+ S I + D+ G++ WF ++ SV WI +V+ I +T+ Sbjct: 213 KTNSVEIDAQYDSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258 >Z50016-14|CAI06050.2| 177|Caenorhabditis elegans Hypothetical protein T21C12.8 protein. Length = 177 Score = 28.3 bits (60), Expect = 8.2 Identities = 13/43 (30%), Positives = 20/43 (46%) Frame = -1 Query: 430 CRIRHEGDTANGSIYQFWFLRSXSVXWITVVILELIHAIRTLT 302 CR+ H G+T NG Y +F +IT + + +LT Sbjct: 124 CRLNHRGETQNGKRY-VYFYSVGKTFFITFFVFSMFLLFASLT 165 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,152,679 Number of Sequences: 27780 Number of extensions: 413188 Number of successful extensions: 1029 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1029 length of database: 12,740,198 effective HSP length: 81 effective length of database: 10,490,018 effective search space used: 2381234086 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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