BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ps4M0211.Seq (730 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 134 5e-32 U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 134 5e-32 U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 134 5e-32 Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 50 2e-06 Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 38 0.006 Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 38 0.006 U70857-9|AAB09174.1| 261|Caenorhabditis elegans C.elegans homeo... 29 2.6 AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical... 29 3.4 >U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor protein 4, isoformd protein. Length = 429 Score = 134 bits (325), Expect = 5e-32 Identities = 80/154 (51%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Frame = -3 Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543 EAVPGDNV FNVK + I C K + F AQVI + +T Sbjct: 267 EAVPGDNVGFNVKNVSVKDIRRGSVCSD-SKQDPAKEARTFHAQVIIMNHP-GQISNGYT 324 Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366 + H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ Sbjct: 325 PVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDY 384 Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264 PLGRFAVRDMRQTVAVGVIK+V + GKVT Sbjct: 385 APLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 418 >U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor protein 4, isoforma protein. Length = 463 Score = 134 bits (325), Expect = 5e-32 Identities = 80/154 (51%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Frame = -3 Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543 EAVPGDNV FNVK + I C K + F AQVI + +T Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSD-SKQDPAKEARTFHAQVIIMNHP-GQISNGYT 358 Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366 + H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ Sbjct: 359 PVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDY 418 Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264 PLGRFAVRDMRQTVAVGVIK+V + GKVT Sbjct: 419 APLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452 >U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor protein 3 protein. Length = 463 Score = 134 bits (325), Expect = 5e-32 Identities = 80/154 (51%), Positives = 94/154 (61%), Gaps = 1/154 (0%) Frame = -3 Query: 722 EAVPGDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHT 543 EAVPGDNV FNVK + I C K + F AQVI + +T Sbjct: 301 EAVPGDNVGFNVKNVSVKDIRRGSVCSD-SKQDPAKEARTFHAQVIIMNHP-GQISNGYT 358 Query: 542 SLGLPHCPH-CLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEF 366 + H H +F E+KEKVDRRTGK E PK +KSGDA IV L+P+KPLCVESF ++ Sbjct: 359 PVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFLKSGDAGIVELIPTKPLCVESFTDY 418 Query: 365 PPLGRFAVRDMRQTVAVGVIKAVNFKEAGGGKVT 264 PLGRFAVRDMRQTVAVGVIK+V + GKVT Sbjct: 419 APLGRFAVRDMRQTVAVGVIKSVEKSDGSSGKVT 452 >Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical protein H19N07.1 protein. Length = 532 Score = 49.6 bits (113), Expect = 2e-06 Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Frame = -3 Query: 485 VDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-V 309 +D++TG+ K +K + I+ L +P +E F+E+P LGRF +RD +T+A+G V Sbjct: 470 IDKKTGEKKRA--KFVKQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKV 527 Query: 308 IKAV 297 +K V Sbjct: 528 LKVV 531 >Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical protein K07A12.4b protein. Length = 592 Score = 38.3 bits (85), Expect = 0.006 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -3 Query: 524 CPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 345 C C F + +++ G+ + P+ I G +A+V + + +E+F LGR Sbjct: 514 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 572 Query: 344 VRDMRQTVAVGVIKAV 297 R T+A G+++ V Sbjct: 573 FRAGGNTIAAGIVEKV 588 >Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical protein K07A12.4a protein. Length = 610 Score = 38.3 bits (85), Expect = 0.006 Identities = 19/76 (25%), Positives = 36/76 (47%) Frame = -3 Query: 524 CPHCLQFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFA 345 C C F + +++ G+ + P+ I G +A+V + + +E+F LGR Sbjct: 532 CVPCT-FTNLLYTINKSNGEILKKGPRFIAKGASAVVEIETEYDIAIETFTSCRALGRVT 590 Query: 344 VRDMRQTVAVGVIKAV 297 R T+A G+++ V Sbjct: 591 FRAGGNTIAAGIVEKV 606 >U70857-9|AAB09174.1| 261|Caenorhabditis elegans C.elegans homeobox protein 33 protein. Length = 261 Score = 29.5 bits (63), Expect = 2.6 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 5/102 (4%) Frame = -3 Query: 710 GDNVSFNVKKRVRQGIASWLCCW*LPKXTHLRVLTDFTAQVIDX*PSWSNLKRLHTSLGL 531 G+ S+ + + R + W C P R L + T + +W +R G+ Sbjct: 133 GEETSYCFRDKSRVLLRDWYCRNSYPSPREKRELAEKTHLTVTQVSNWFKNRRQRDRAGV 192 Query: 530 PHCPHCLQFAEIKE--KVDRRTG---KSTEVNPKSIKSGDAA 420 P CL+ +E K+ R+T ++ NP + S AA Sbjct: 193 PEPKDCLKDISEEEDLKLIRKTASKLSNSFHNPSDLSSYSAA 234 >AL033514-38|CAA22111.2| 341|Caenorhabditis elegans Hypothetical protein Y75B8A.33 protein. Length = 341 Score = 29.1 bits (62), Expect = 3.4 Identities = 10/36 (27%), Positives = 18/36 (50%) Frame = -1 Query: 157 KRATNSFLFYIFYKACNVTLFYNLYKVIHNISETFC 50 KR NS++F I+ C + F Y++ + +C Sbjct: 262 KRDVNSYVFVIWGVVCQILFFLTTYRIAELVVRIYC 297 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,403,962 Number of Sequences: 27780 Number of extensions: 332739 Number of successful extensions: 879 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 852 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 870 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1718929214 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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