Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0092.Seq
(848 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical pr... 68 7e-12
AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical ... 44 2e-04
U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin fam... 39 0.004
Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical pr... 38 0.009
Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical pr... 38 0.012
Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein. 37 0.021
U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin fam... 36 0.036
U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin fam... 32 0.59
AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical ... 31 0.78
Z75531-4|CAA99805.1| 408|Caenorhabditis elegans Hypothetical pr... 30 1.8
U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical pr... 29 4.2
U42832-3|AAA83573.2| 361|Caenorhabditis elegans Tetraspanin fam... 29 4.2
U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily ass... 28 7.3
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass... 28 7.3
U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12 transcrip... 28 7.3
Z72506-3|CAA96617.1| 310|Caenorhabditis elegans Hypothetical pr... 28 9.6
U97549-5|AAO91739.1| 212|Caenorhabditis elegans Dopamine recept... 28 9.6
U97549-4|AAO91736.1| 460|Caenorhabditis elegans Dopamine recept... 28 9.6
>Z81128-2|CAB03397.2| 232|Caenorhabditis elegans Hypothetical
protein T23D8.2 protein.
Length = 232
Score = 68.1 bits (159), Expect = 7e-12
Identities = 36/129 (27%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Frame = -1
Query: 647 VKDLLKTHLAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LA 468
V D+L P + +V+G++ ++ FLGCCGAIRE++C+ V++A C+ +A
Sbjct: 41 VLDILGDERLATPILLLVIGSLCTLLGFLGCCGAIRENYCLTVSFAVLLALLITCE--IA 98
Query: 467 SSSSLRREHQGEHYGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAINYGQF-T 291
+ H G ++ + + E+ + + + FECCG T + ++ F T
Sbjct: 99 AVIIGYALHDSFRLGIGNQLQTGMVRYHESRGVESAWDKTHQLFECCGVTNSSDWLTFTT 158
Query: 290 LPESCCVKK 264
+P+SCC+++
Sbjct: 159 IPDSCCIEE 167
Score = 32.7 bits (71), Expect = 0.34
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 213 PGCGPKIGELYQKWNKPIAGVALGVACVEVVGALFALCLANSI 85
PGC + + K + G+ +A +++VG FA CL+ SI
Sbjct: 181 PGCIHSVEQWVLKNGAMVGGICAVLAAIQLVGVCFACCLSKSI 223
>AL132948-5|CAC51071.1| 321|Caenorhabditis elegans Hypothetical
protein Y39B6A.6 protein.
Length = 321
Score = 43.6 bits (98), Expect = 2e-04
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 2/116 (1%)
Frame = -1
Query: 608 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRREHQGEH 429
+I IV+GAVM V+A LGCCG S ++ Y+ + + +++
Sbjct: 115 YIIIVLGAVMMVVAMLGCCGITGRSRPFLIIYSMVVFLLLVATLSCGIYLLYKKDGLDVE 174
Query: 428 YGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAINYGQF--TLPESCCVK 267
+ + E++ LQ F CCGN G ++ F +P SC ++
Sbjct: 175 LSDALNYMVQHYYQGPGVVQESL-DHLQTAFRCCGNAGCSDFRVFRQDIPRSCDIR 229
>U41028-2|AAA82355.1| 233|Caenorhabditis elegans Tetraspanin family
protein 9 protein.
Length = 233
Score = 39.1 bits (87), Expect = 0.004
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -1
Query: 608 WIFIVVGAVMFVIAFLGCCGAIRES 534
WI + VGA++F++ F GCCGA ES
Sbjct: 69 WILVAVGALLFLVGFFGCCGAGCES 93
>Z68880-6|CAA93092.1| 308|Caenorhabditis elegans Hypothetical
protein T14G10.6 protein.
Length = 308
Score = 37.9 bits (84), Expect = 0.009
Identities = 25/106 (23%), Positives = 49/106 (46%)
Frame = -1
Query: 608 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRREHQGEH 429
W ++VG + F+I F GC G++RE+ + Y+T + ++ A + Q ++
Sbjct: 86 WPLLIVGFLTFIIGFSGCVGSLRENTSFLTFYSTLLGLLLIAEF-SAGVFAYACRDQLDN 144
Query: 428 YGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAINYGQFT 291
Y R + + D + + +Q + CCG GA ++ + T
Sbjct: 145 Y-IRNLLNDVVVGYRDDPDLQLLIDSMQETWMCCGINGADDWDRNT 189
>Z69790-4|CAA93655.1| 282|Caenorhabditis elegans Hypothetical
protein F33C8.3 protein.
Length = 282
Score = 37.5 bits (83), Expect = 0.012
Identities = 21/95 (22%), Positives = 43/95 (45%)
Frame = -1
Query: 608 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRREHQGEH 429
W + GA++ ++ + GC GA + + C + + + + A + ++EH +H
Sbjct: 58 WFLVGAGAIIILVGYFGCIGAWKMNQCALAFFCCILILAFFLELAAAVTLFHKQEHI-KH 116
Query: 428 YGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCG 324
Y +++ A + F +Q +FECCG
Sbjct: 117 YVESSMYDTIRNRYSSETAFKDAFDTVQEKFECCG 151
>Z92824-4|CAB07307.2| 395|Caenorhabditis elegans B0413.2 protein.
Length = 395
Score = 36.7 bits (81), Expect = 0.021
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -1
Query: 608 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYA 510
+I IV+GAVM V+A GCCG S ++ Y+
Sbjct: 226 YIXIVLGAVMMVVAMXGCCGITGRSRPFLIIYS 258
>U28740-6|AAA68322.4| 317|Caenorhabditis elegans Tetraspanin family
protein 11 protein.
Length = 317
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/36 (41%), Positives = 24/36 (66%)
Frame = -1
Query: 608 WIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSC 501
++ V G ++ V+AFLGCCGA +E ++ Y +SC
Sbjct: 84 YLLFVGGFIVIVVAFLGCCGAAKEWRPLLCCY-SSC 118
>U41545-5|AAK39137.2| 243|Caenorhabditis elegans Tetraspanin family
protein 17 protein.
Length = 243
Score = 31.9 bits (69), Expect = 0.59
Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 4/111 (3%)
Frame = -1
Query: 623 LAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LASSSSLRRE 444
L ++ +V G ++ FLG CGA+ S +++ + + L + + S ++
Sbjct: 23 LKASAYVSLVCGCAQLLVGFLGLCGAVNRSRFLLLAFVMFLIGTFLADVAMGTLSLFYKD 82
Query: 443 HQGEHYGWRRRVIQKEI*PNADEAAEAVFSE----LQRQFECCGNTGAINY 303
R +++ + E + +E LQ +CCG+ G +Y
Sbjct: 83 KVYSVKENVREIVKSKYGVMTSEPENKMVTEFIDKLQFYEKCCGSLGPTDY 133
>AL110487-3|CAB54426.1| 223|Caenorhabditis elegans Hypothetical
protein Y39E4B.4 protein.
Length = 223
Score = 31.5 bits (68), Expect = 0.78
Identities = 27/124 (21%), Positives = 50/124 (40%)
Frame = -1
Query: 647 VKDLLKTHLAVGPWIFIVVGAVMFVIAFLGCCGAIRESHCMVVTYATSCW*SSLCKW*LA 468
VK ++T + V WI I +I F+G GA+ S ++ Y L + +
Sbjct: 59 VKSDIRTGIIVSFWIIIGFAIANVIIGFVGVIGAVIRSKYLLAPYFLFMVILFLLEIAIG 118
Query: 467 SSSSLRREHQGEHYGWRRRVIQKEI*PNADEAAEAVFSELQRQFECCGNTGAINYGQFTL 288
+ ++R RR +++ + + + A+A S ++ CCG N F
Sbjct: 119 ITVLVKRRSV-------RRTVKEYVFDSFNMNAQADISAFNFRYNCCGAENLPNLNCFAG 171
Query: 287 PESC 276
+C
Sbjct: 172 QPTC 175
>Z75531-4|CAA99805.1| 408|Caenorhabditis elegans Hypothetical
protein C54D10.4 protein.
Length = 408
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -1
Query: 362 VFSELQRQFECCGNTGAINYGQF 294
+ +QR++ CCG GAI+YG F
Sbjct: 276 IADRVQRRYCCCGYNGAIDYGFF 298
>U80840-9|AAB37924.1| 289|Caenorhabditis elegans Hypothetical
protein F08D12.3a protein.
Length = 289
Score = 29.1 bits (62), Expect = 4.2
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Frame = -1
Query: 389 PNADEAAEAVFSELQRQFECCGNTGAINYG-----QFTLPESCCVKKSILLPSPATTARS 225
P EA F +Q C + G +G Q + CC K + PS AT ++
Sbjct: 198 PTTKEAVCCYFDGIQVLSACKSSAGPAVFGSCPPGQVVVGSDCCEAKDVYDPSTATCQKN 257
Query: 224 TPRIPAAV 201
PAAV
Sbjct: 258 EDVGPAAV 265
>U42832-3|AAA83573.2| 361|Caenorhabditis elegans Tetraspanin family
protein 16 protein.
Length = 361
Score = 29.1 bits (62), Expect = 4.2
Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 10/130 (7%)
Frame = -1
Query: 683 GLELAFLMNWTMVKDLLKTHLAVG-PWIFIVVGAVMFVIAFLGCCGAIRESHCMVVT--- 516
G + L + ++ T+L V P++ I+VG + FV+ + I + +++T
Sbjct: 112 GFGIQTLREVSFTASVIGTNLIVYCPYLLILVGILSFVMTPVRFFSIILNDNKIMITHMF 171
Query: 515 ----YATSCW*SSLCKW*LASS-SSLRREHQGEHYGWRRRVIQKEI*-PNADEAAEAVFS 354
+AT C +++ + L S SS EH W + I+++ P A E ++
Sbjct: 172 ATIFFATICAMTAILGYDLNSHVSSSDMEH------WMKHSIKEDYGNPTAPHIMEE-WN 224
Query: 353 ELQRQFECCG 324
+ RQF+CCG
Sbjct: 225 KAHRQFKCCG 234
>U23168-5|ABD63247.1| 2702|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform e protein.
Length = 2702
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +1
Query: 325 PQHSNCRCNSEKTASAA---SSALGQISF*ITRRR----HP*CSP*CSRRSEEEDANHHL 483
PQ C C E + SAA S+ S I R HP C S +E N H
Sbjct: 1715 PQFFRCSCTKEASTSAAAALSAGSKSESCKIVRLASNLGHPTSLVLCESSSVQETNNVHY 1774
Query: 484 HNDDHQQEVA 513
D+H + ++
Sbjct: 1775 QRDEHHEHIS 1784
>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
gene nameprotein 308, isoform c protein.
Length = 7548
Score = 28.3 bits (60), Expect = 7.3
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Frame = +1
Query: 325 PQHSNCRCNSEKTASAA---SSALGQISF*ITRRR----HP*CSP*CSRRSEEEDANHHL 483
PQ C C E + SAA S+ S I R HP C S +E N H
Sbjct: 6561 PQFFRCSCTKEASTSAAAALSAGSKSESCKIVRLASNLGHPTSLVLCESSSVQETNNVHY 6620
Query: 484 HNDDHQQEVA 513
D+H + ++
Sbjct: 6621 QRDEHHEHIS 6630
>U08022-1|AAA17722.1| 515|Caenorhabditis elegans STE12
transcriptional activator protein.
Length = 515
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 460 EEDANHHLHNDDHQQEV-AYVTTMQ*LSRIAPQHPKNAITNITAPTTMK 603
EEDA H D+H++E+ + ++ P+ A + TA TT K
Sbjct: 460 EEDAEHTSSEDNHEKELDPFAAVLKFFENNPPREALEAAGSETAATTQK 508
>Z72506-3|CAA96617.1| 310|Caenorhabditis elegans Hypothetical
protein F07A5.2 protein.
Length = 310
Score = 27.9 bits (59), Expect = 9.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = -1
Query: 248 SPATTARSTPRIPAAVPRSASSTRNGT 168
S ++++S PRI + +PRS+SS +GT
Sbjct: 55 STTSSSKSRPRIKSKLPRSSSSGFSGT 81
>U97549-5|AAO91739.1| 212|Caenorhabditis elegans Dopamine receptor
protein 1, isoformd protein.
Length = 212
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 86 MELARHSANRAPTTSTQATPR 148
M ++RH + R+ TT+T ATPR
Sbjct: 1 MTVSRHYSRRSTTTTTTATPR 21
>U97549-4|AAO91736.1| 460|Caenorhabditis elegans Dopamine receptor
protein 1, isoforma protein.
Length = 460
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 86 MELARHSANRAPTTSTQATPR 148
M ++RH + R+ TT+T ATPR
Sbjct: 249 MTVSRHYSRRSTTTTTTATPR 269
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,401,072
Number of Sequences: 27780
Number of extensions: 336869
Number of successful extensions: 1124
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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