Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0074.Seq
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical pr...    74   6e-14
AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine re...    28   4.2  
Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical pr...    28   5.6  
L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>Z78413-6|CAB01658.1|  144|Caenorhabditis elegans Hypothetical
           protein T01C3.6 protein.
          Length = 144

 Score = 74.1 bits (174), Expect = 6e-14
 Identities = 34/45 (75%), Positives = 38/45 (84%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCEPKKFGGPGARARYQKSXR 461
           E SK+E+K+I   YD+SLLVADPRR E KKFGGPGARARYQKS R
Sbjct: 100 EQSKRELKNIFAAYDKSLLVADPRRRESKKFGGPGARARYQKSYR 144


>AF077542-8|AAC26300.2|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein64 protein.
          Length = 342

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 353 VFDFLL*GFEWINEIPTVPIY 291
           V +  L G+EWIN IP VP Y
Sbjct: 188 VVELELTGWEWINYIPYVPFY 208


>Z93372-4|CAB07546.1|  301|Caenorhabditis elegans Hypothetical
           protein BE10.4 protein.
          Length = 301

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 327 EASKKEIKDILVQYDRSLLVADPRRCE 407
           E  +KE+ D+  QYDRS+ + D  R E
Sbjct: 154 EVQQKEVGDLFHQYDRSIEIIDKVRHE 180


>L11247-4|AAK84520.1|  392|Caenorhabditis elegans Hypothetical
           protein F09G8.3 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 378 LLVADPRRCEPKKFGGPGARARY 446
           LL  DPR+ E  K   PGARA++
Sbjct: 365 LLTLDPRKNERSKVNQPGARAKW 387


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -3

Query: 77  CCG*KARSCICAPRCRC 27
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,197,408
Number of Sequences: 27780
Number of extensions: 233325
Number of successful extensions: 501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 495
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)