Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0069.Seq
         (830 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z93375-1|CAB07563.1|  328|Caenorhabditis elegans Hypothetical pr...    28   7.1  

>Z75711-11|CAB00038.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 535 LQFAIRHSGRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQS 395
           L+ AI   G+N W     R +SLL + +   C AR   W+ PG  ++
Sbjct: 19  LKAAIMKYGKNQWS----RIASLLHRKSAKQCKARWFEWLDPGIKKT 61


>Z75710-10|CAB00029.1|  755|Caenorhabditis elegans Hypothetical
           protein D1081.8 protein.
          Length = 755

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -2

Query: 535 LQFAIRHSGRNCWEGRSVRASSLLRQLAKGGCAARRLSWVTPGFSQS 395
           L+ AI   G+N W     R +SLL + +   C AR   W+ PG  ++
Sbjct: 19  LKAAIMKYGKNQWS----RIASLLHRKSAKQCKARWFEWLDPGIKKT 61


>Z93375-1|CAB07563.1|  328|Caenorhabditis elegans Hypothetical
           protein C38C6.3 protein.
          Length = 328

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 643 EIGLNVVPSFGTRVPLI*RTWTPTSKGRKNRSIQGXWPXYXTLHPNPRFFXG 798
           + G +V  + G  VP +   +   +K  KN+ I G  P Y  ++P+  F  G
Sbjct: 250 QFGESVAKALG--VPSLNNVFNKLAKNSKNKKISGYEPGYGAVNPHGPFAIG 299


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,374,046
Number of Sequences: 27780
Number of extensions: 388489
Number of successful extensions: 869
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2061488408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)