Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0122
         (705 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical ...    30   1.9  
U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine rece...    28   7.5  
AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.    27   9.9  
AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln (ne...    27   9.9  

>AF000191-4|AAB52881.2|  362|Caenorhabditis elegans Hypothetical
           protein T23C6.5 protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +2

Query: 443 HPT-HFCICVSYLSFFPLHPV*NTTILKKFSLQKHYR 550
           HP  HF +CVSYL  F    + N  IL  F  QK  R
Sbjct: 9   HPVVHFLLCVSYLFVFLATIIGNLIILLVFFSQKRVR 45


>U88310-2|AAB42338.2|  635|Caenorhabditis elegans Hypothetical
           protein C24G7.2 protein.
          Length = 635

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/52 (30%), Positives = 24/52 (46%)
 Frame = +3

Query: 231 LKYNYPKCLSICKILSLVNNCKVAPSVN*YFNFRYNPKLTRAFIHTLVLKNL 386
           L Y+   CLS+CK    + NC   P++   +N   N K    +  T  L N+
Sbjct: 373 LSYSSGNCLSLCKAKFYMENCGCTPAL---YNIENNLKECTPYETTTCLDNI 421


>U50300-5|AAC48103.2|  337|Caenorhabditis elegans Serpentine
           receptor, class t protein18 protein.
          Length = 337

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 145 NMYINILHSFSILPISVRAIFVEGYKV 65
           N+Y+NI H F+ + +S+  +   GY V
Sbjct: 210 NLYVNIYHIFNNMMVSICTVLFYGYLV 236


>AF326787-1|AAK38268.1|  417|Caenorhabditis elegans CLN-3.3 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 320 ISIH-RGRYLTIIY**QNFTYT*TFRIIVF*FWKVSLLPRVNCTHFV-FFIDLMYFY 156
           +S+H + R+  ++Y    F    + R++    W + LLP +  T+ + FF D +Y++
Sbjct: 287 LSLHSQYRWYQVLYQFGVFVSRSSIRLVELPMWMLYLLPFLQLTNMLFFFFDALYWF 343


>AF078788-5|AAC26960.2|  417|Caenorhabditis elegans Human cln
           (neuronal ceroid lipofuscinosis)related protein 3.3
           protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -2

Query: 320 ISIH-RGRYLTIIY**QNFTYT*TFRIIVF*FWKVSLLPRVNCTHFV-FFIDLMYFY 156
           +S+H + R+  ++Y    F    + R++    W + LLP +  T+ + FF D +Y++
Sbjct: 287 LSLHSQYRWYQVLYQFGVFVSRSSIRLVELPMWMLYLLPFLQLTNMLFFFFDALYWF 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,250,719
Number of Sequences: 27780
Number of extensions: 354356
Number of successful extensions: 995
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)