Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0027
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    51   9e-07
Z66496-3|CAA91279.2|  570|Caenorhabditis elegans Hypothetical pr...    41   0.001
Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical...    29   2.4  
AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical...    29   2.4  
Z68118-6|CAA92187.1|  311|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
 Frame = +2

Query: 14  FNHLFWSPSGQFIVLANLGLTGGALEFLDTN--DFTIMNVADHYQMSGIEWDPTGRYVVT 187
           FN + ++P G ++ +      GG + F+DT+  +    NV +H   +   WDPTGRY VT
Sbjct: 515 FNEVQFAPKGGWLAVLAKVSAGGNVYFIDTSLSEAKRTNVIEHPLFNKGYWDPTGRYFVT 574

Query: 188 -GVSSXKCKMDCGYYIWSFQGK 250
                 +   D GY I++FQG+
Sbjct: 575 CSTLGGRAGADLGYRIFTFQGR 596



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 33/123 (26%), Positives = 49/123 (39%)
 Frame = +1

Query: 148 WDRMGSNRTLCSDWCVFXQM*NGLRLLHLVIPGQDTRRVMKEGFAQFHWRPRPPTLLSXX 327
           WD  G     CS          G R+      G++  R   +  AQF WRPRPP  LS  
Sbjct: 565 WDPTGRYFVTCSTLGGRAGADLGYRIF--TFQGRELCRKNLDRLAQFKWRPRPPVKLSEQ 622

Query: 328 XXXXXXXXXXXYYSQFESKDRMRSSKASKELVAKRTEQMKKFTEYRESKIQEWNEQKPRR 507
                        ++F  +D     +AS+E+V KR + M  F   R    ++ +  +  R
Sbjct: 623 KQREIKKNLKKTAAKFIKQDDDEKCRASQEVVEKRRKIMAAFDIIRSRNREQLDATRDER 682

Query: 508 PNL 516
            +L
Sbjct: 683 ISL 685


>Z66496-3|CAA91279.2|  570|Caenorhabditis elegans Hypothetical
           protein E04D5.1a protein.
          Length = 570

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 11  PFNHLFWSPSGQFIVLANLG-LTGGALEFLDTNDFTIMNVADHYQMSGIEWDPTGRYVVT 187
           P N +F++  G  +++   G +  G +EF D      +   +    +  +W P G++ VT
Sbjct: 319 PRNDVFYNAFGNIVLICGFGNIAKGKMEFWDVETKKEIISIEVPNTTLFDWAPDGQHFVT 378

Query: 188 GVSSXKCKMDCGYYIWSFQGKIPGE 262
             ++ + ++D  Y  W + G++  E
Sbjct: 379 CTTAPRLRIDNSYRFWHYTGRMLAE 403


>Z81529-4|CAB04295.1|  272|Caenorhabditis elegans Hypothetical
           protein F35E8.6 protein.
          Length = 272

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 643 PQTCVAYSDYSMTVCSSFTKNSITSSTVF 557
           P TC +Y   S T C+ + +N   +ST++
Sbjct: 228 PATCTSYMPDSTTKCAEYARNGFCTSTMY 256


>AC025726-36|AAL27268.1|  487|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1b protein.
          Length = 487

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 17  NHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQM-SGIEWDPTGRYVVTGV 193
           N L W PSG  +   +   T   L   D      + VA +++  +G+ WDP+G+Y+ T  
Sbjct: 138 NALCWDPSGTQLASVSNDHT---LAVHDALTGKRLFVASNFRSPNGVCWDPSGKYIAT-- 192

Query: 194 SSXKCKMD 217
            S   KMD
Sbjct: 193 MSPDRKMD 200


>AC025726-35|AAL27267.1|  489|Caenorhabditis elegans Hypothetical
           protein Y71G12B.1a protein.
          Length = 489

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 17  NHLFWSPSGQFIVLANLGLTGGALEFLDTNDFTIMNVADHYQM-SGIEWDPTGRYVVTGV 193
           N L W PSG  +   +   T   L   D      + VA +++  +G+ WDP+G+Y+ T  
Sbjct: 140 NALCWDPSGTQLASVSNDHT---LAVHDALTGKRLFVASNFRSPNGVCWDPSGKYIAT-- 194

Query: 194 SSXKCKMD 217
            S   KMD
Sbjct: 195 MSPDRKMD 202


>Z68118-6|CAA92187.1|  311|Caenorhabditis elegans Hypothetical
           protein R01E6.6 protein.
          Length = 311

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 367 SQFESKDRMRSSKASKELVAKRTEQMKK 450
           +  + KDR +SS+ SK +   RT+ M+K
Sbjct: 64  TSIKDKDRPKSSRESKNIEISRTKSMRK 91


>U21322-6|AAN65314.2|  669|Caenorhabditis elegans Hypothetical
           protein K10D2.1b protein.
          Length = 669

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 29  WSPSGQFIVLANLGLTGGALEFLDTND-FTIMNVADHYQMSGIEWDPTGRYVVT 187
           WSP+G+++   ++             D  T++N      + G+ WDP G+Y+ +
Sbjct: 141 WSPNGKYLASGSIDYRIIIYNARKLPDRITVLNDIQ-LPVKGLSWDPIGKYLAS 193


>U21322-5|AAA62539.1| 1223|Caenorhabditis elegans Hypothetical
           protein K10D2.1a protein.
          Length = 1223

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 29  WSPSGQFIVLANLGLTGGALEFLDTND-FTIMNVADHYQMSGIEWDPTGRYVVT 187
           WSP+G+++   ++             D  T++N      + G+ WDP G+Y+ +
Sbjct: 429 WSPNGKYLASGSIDYRIIIYNARKLPDRITVLNDIQ-LPVKGLSWDPIGKYLAS 481


>AF016445-8|AAC69052.1|  244|Caenorhabditis elegans Hypothetical
           protein T05B4.12 protein.
          Length = 244

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 637 TCVAYSDYSMTVCSSFTKNSITSSTVF 557
           TC +Y+  S T C+S+ KN   ++T +
Sbjct: 202 TCTSYAADSSTSCTSWAKNGFCTNTFY 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,651,828
Number of Sequences: 27780
Number of extensions: 281382
Number of successful extensions: 796
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)