Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0039.Seq
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81584-7|CAE17905.1|  202|Caenorhabditis elegans Hypothetical pr...    29   4.0  
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        28   5.3  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    28   5.3  
Z19555-1|CAA79618.1|  608|Caenorhabditis elegans Hypothetical pr...    27   9.2  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z81584-7|CAE17905.1|  202|Caenorhabditis elegans Hypothetical
           protein T04C12.7 protein.
          Length = 202

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = -3

Query: 495 PSGSSDDDMLHALPPPSNDTLRF-FLNDCASIQPGMPPGMGASCHTESSDSVVH--AFAC 325
           P  S++ D+ +A P   +   RF F   C  I  G+   M    + E+ D++ +  AF+ 
Sbjct: 97  PQTSTETDIKNATPLKMHRISRFTFCCLCMCIPIGILWTMQIYDNHENCDNLTYWTAFSV 156

Query: 324 SLAYVCETQDVTTACGTGC 268
           S+ Y+C    + + C  GC
Sbjct: 157 SILYLCWMCLMVSVCLLGC 175


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 519  QERQSRAFPSGSSDDDMLHALPPP 448
            QE+ + +F S   +DD ++ALPPP
Sbjct: 1057 QEQPTSSFSSWFPEDDPIYALPPP 1080


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
            protein Y47D3A.6a protein.
          Length = 1109

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 519  QERQSRAFPSGSSDDDMLHALPPP 448
            QE+ + +F S   +DD ++ALPPP
Sbjct: 1056 QEQPTSSFSSWFPEDDPIYALPPP 1079


>Z19555-1|CAA79618.1|  608|Caenorhabditis elegans Hypothetical
           protein F02A9.4a protein.
          Length = 608

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/32 (31%), Positives = 22/32 (68%)
 Frame = +2

Query: 428 NLKVSLLGGGRAWSMSSSLEPDGKARDCRSWT 523
           N ++S++GG +A ++ S+++ + K R+   WT
Sbjct: 512 NSRISVMGGEQAANVLSTVQKEKKKREGADWT 543


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
            protein F52G3.1 protein.
          Length = 1172

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 453  PPSNDTLR-----FFLNDCASIQPGMPPGMGASCHTESSDSV 343
            PPSN T       FF N+      G PPG+ A+ H+   D +
Sbjct: 1062 PPSNGTSHQDNGPFFFNNGNRAPIGRPPGLSAAGHSAQLDMI 1103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,328,266
Number of Sequences: 27780
Number of extensions: 306742
Number of successful extensions: 991
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)