Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301G10f
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical ...    28   2.7  
U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    27   6.1  

>AL033512-3|CAA22077.1|  243|Caenorhabditis elegans Hypothetical
           protein Y49A3A.4 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 426 RHILLCTTKAYSSIFAKVICTLHSLCRICTSS 331
           R+  LCT +AYS +F K IC     C  CTS+
Sbjct: 205 RNQKLCTHRAYSPLFRK-ICA--KTCEYCTSA 233


>U40958-5|AAA81764.1|  654|Caenorhabditis elegans Hypothetical
           protein F09F9.4 protein.
          Length = 654

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 329 ELDVHILHKLCRVQITFAKIEL*AFVV 409
           EL VHIL KLCR  ++  ++E  +F V
Sbjct: 113 ELTVHILPKLCREDLSDIQLEYRSFQV 139


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical
           protein F28B4.3 protein.
          Length = 2229

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -3

Query: 309 FLFRNNTNIIDFCQINEYTITSKKQVVLKDDY 214
           F F N T I +F  ++ Y    + Q+ L  DY
Sbjct: 588 FYFNNRTTISNFFYVHMYNTLFRSQLALSGDY 619


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,227,961
Number of Sequences: 27780
Number of extensions: 172217
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)