Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301F04f
         (359 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    27   3.9  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    27   3.9  

>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 34  MKAFIAVLFVVASVLGDPEPSKTI 105
           MK F  +  VVASVL D  PS T+
Sbjct: 1   MKVFAVLALVVASVLADTLPSVTL 24


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +1

Query: 34  MKAFIAVLFVVASVLGDPEPSKTI 105
           MK F  +  VVASVL D  PS T+
Sbjct: 1   MKVFAVLALVVASVLADTLPSVTL 24


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,477,436
Number of Sequences: 27780
Number of extensions: 89780
Number of successful extensions: 276
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)