Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301D09f
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical ...    27   6.5  
AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine re...    26   8.7  

>AF106579-8|AAC78201.1|  710|Caenorhabditis elegans Hypothetical
           protein F54E2.5 protein.
          Length = 710

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 283 FSNNSIRIRTC*YPVVFITKRGTFENYLSYFYLRLYS 173
           FSN  I I  C +P VF+     F N+ S  Y+ L S
Sbjct: 496 FSNLVIAIHPCQFPAVFLV-LNIFLNFSSIIYIWLMS 531


>AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine
           receptor, class sx protein8 protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -2

Query: 365 LIIRVS*VTTFRSKHDAFQCLETFSRIF 282
           LI  +   ++FRSK    QC+++F+++F
Sbjct: 27  LIYIILTTSSFRSKASYLQCIQSFAQVF 54


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,794,980
Number of Sequences: 27780
Number of extensions: 136803
Number of successful extensions: 205
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)