Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS301B09f
         (406 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical pr...    33   0.10 
AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine re...    29   1.3  
L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical pr...    28   2.9  
Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical pr...    27   6.8  
Z92782-11|CAE17813.1|  382|Caenorhabditis elegans Hypothetical p...    26   9.0  

>Z82071-2|CAB04918.2|  362|Caenorhabditis elegans Hypothetical
           protein W05B5.2 protein.
          Length = 362

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = -2

Query: 252 SMVYFLIIANYS*RNSLVFVT-DLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXSIYCQR 76
           ++V  ++  N S RN+L  V  +LA+   +ILL  + + + NDVT   +   F +++C+ 
Sbjct: 65  TLVVVVVATNKSMRNALNLVLMNLAIADLLILLFCLPLTVVNDVTKTFW---FSAVFCKS 121

Query: 75  FNLTN 61
            N  N
Sbjct: 122 VNFVN 126


>AF067613-9|AAN73863.2|  326|Caenorhabditis elegans Serpentine
           receptor, class z protein20 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 21/80 (26%), Positives = 46/80 (57%)
 Frame = -2

Query: 339 LFIYLISFVRNLRS*VLIVYFPLCPRTNKSMVYFLIIANYS*RNSLVFVTDLAVVVFIIL 160
           +F ++  F   +R  V I++  +C     +++ F+I+A Y+ R++ + +  LAV++F++ 
Sbjct: 60  IFPFVNHFYSVIRM-VQIIFLCMC-----TVIIFIILA-YTLRSTSLVILTLAVMIFVV- 111

Query: 159 LSVVTIYLRNDVTFVLFLSL 100
           LS + + +    TF + L L
Sbjct: 112 LSGIFVLIGTSETFNMLLFL 131


>L16621-5|AAA28230.1|  214|Caenorhabditis elegans Hypothetical
           protein ZK688.3 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = -3

Query: 305 CDLEYLLFTFPYVLAQTNRWFTS*LSLIIVSGTP 204
           C  + ++F  P +L  T ++FT  +  ++++GTP
Sbjct: 154 CRTDVMIFDIPTLLEYTTQFFTLEVGDVVLTGTP 187


>Z81100-1|CAB03194.1|  331|Caenorhabditis elegans Hypothetical
           protein K08G2.7 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 6.8
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -2

Query: 246 VYFLIIANYS*RNSLVFVTDLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXS-IYCQRF 73
           ++F + + Y    ++    D+ V +F+I LS +    RN      FL LF S + C +F
Sbjct: 246 IFFKLSSEYHTMKAISTTRDMYVSIFVIQLSYILCNKRN---MSSFLKLFKSDVTCLKF 301


>Z92782-11|CAE17813.1|  382|Caenorhabditis elegans Hypothetical
           protein F14F8.11 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 9.0
 Identities = 12/57 (21%), Positives = 29/57 (50%)
 Frame = -2

Query: 252 SMVYFLIIANYS*RNSLVFVTDLAVVVFIILLSVVTIYLRNDVTFVLFLSLFXSIYC 82
           ++ +  ++   S RNS VF+  + + +  ++  +  I  ++ + + + LSLF    C
Sbjct: 52  NIFHLAVLTRKSIRNSSVFIFLIGIAICDLVRMISIIVSKSPIFYRVLLSLFIDSTC 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,125,717
Number of Sequences: 27780
Number of extensions: 136704
Number of successful extensions: 333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 641068680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)