Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0120
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AC006830-3|AAP13735.1|  348|Caenorhabditis elegans Serpentine re...    28   6.6  
Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical pr...    28   8.7  
AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical...    28   8.7  

>U40936-1|AAL65777.2|  770|Caenorhabditis elegans Hypothetical
           protein C13E3.1 protein.
          Length = 770

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +3

Query: 225 IFNGSDGCDRVGSSIATFLKNLKLP--LNKVHIVGFNLGAHVAGVTGRNLEGKVARITGL 398
           IF G D  ++  + +++F +   +P  L  VH+ G NL   +  +        +  + GL
Sbjct: 546 IFFGLDKTNK-NNHLSSFWRTECMPIVLGLVHMAGHNLVDQIDSMNQTESSEILHSMPGL 604

Query: 399 DPSARDWENNVLRLG 443
            P  + W   V R G
Sbjct: 605 SPQTKTWLKQVTRYG 619


>AC006830-3|AAP13735.1|  348|Caenorhabditis elegans Serpentine
           receptor, class w protein3 protein.
          Length = 348

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 448 TMLNTLKLFTPTDLVSTKTAWRCYWTH 528
           T +NT  +F+P  +  TK    CY TH
Sbjct: 64  TQINTFLIFSPFWIRETKVGEECYMTH 90


>Z71178-5|CAA94879.1| 1161|Caenorhabditis elegans Hypothetical protein
            B0024.6 protein.
          Length = 1161

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
 Frame = +3

Query: 231  NGSDGCDRVGSSIATFLKNLK------LPLNKVHI-VGFNLGAHVAGVTG 359
            NG++    + S    F+K+L       LP  K+ I VGF+ G+ VAGV G
Sbjct: 1012 NGNEHTRNIASMSINFVKSLADFSIPHLPGEKIKIRVGFHCGSVVAGVVG 1061


>AL031633-27|CAA21029.2|  385|Caenorhabditis elegans Hypothetical
           protein Y39A1A.17 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = -3

Query: 293 FEIFQKSSDT*SHPVTAI-TAVEYVDKLNDDQS 198
           FE+FQ  + + +  V  + T +EY+DK +D+Q+
Sbjct: 193 FEVFQNFNSSKTLEVGLVGTIIEYIDKFDDEQA 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,942,336
Number of Sequences: 27780
Number of extensions: 409288
Number of successful extensions: 995
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)