Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= mg--0023
         (429 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.20 
AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical ...    27   7.5  
Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical pr...    26   10.0 
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    26   10.0 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    26   10.0 
AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin prot...    26   10.0 

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 102  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 206
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL034489-1|CAA22461.1|  538|Caenorhabditis elegans Hypothetical
           protein Y7A5A.1 protein.
          Length = 538

 Score = 26.6 bits (56), Expect = 7.5
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 319 MLNITRSRHHPGSDLF-CFIWN*NAFKFLINLSMRCKK 429
           ++ +T S  H  SDLF C  W+     FL+ L++R  K
Sbjct: 186 VITVTDSNEH--SDLFYCLPWSHGTLGFLVGLTLRIVK 221


>Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical
           protein F44D12.2 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 151 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 53
           +CH+  +  PRLP ++  + C   FC + A  R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 87   EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCC 233
            EH   SC+SG  G +C   C   +    D ISG     Q  G  G+K +R C
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC 1244


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 87   EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSRCC 233
            EH   SC+SG  G +C   C   +    D ISG     Q  G  G+K +R C
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC 1244


>AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin protein
           2 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 172 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 83
           L+E  DP C ++ +++P++    +E   +F
Sbjct: 68  LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,422,955
Number of Sequences: 27780
Number of extensions: 181166
Number of successful extensions: 383
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)