Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00090X
         (351 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin f...    28   2.2  
AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin f...    28   2.2  
Z82060-1|CAB04881.2|  448|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical ...    26   6.6  
AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical ...    26   6.6  

>AF039043-9|AAB94196.1|  427|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform a protein.
          Length = 427

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 319 RESRTQWATRHPGAXQSGRPTARATTLARPH 227
           R  RT   TR P A     PT +ATT  R H
Sbjct: 381 RRKRTATTTRTPPAAAGPAPTPQATTTNRTH 411


>AF039043-8|AAL02514.1|  451|Caenorhabditis elegans Tetraspanin
           family protein 14,isoform b protein.
          Length = 451

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 319 RESRTQWATRHPGAXQSGRPTARATTLARPH 227
           R  RT   TR P A     PT +ATT  R H
Sbjct: 405 RRKRTATTTRTPPAAAGPAPTPQATTTNRTH 435


>Z82060-1|CAB04881.2|  448|Caenorhabditis elegans Hypothetical
           protein T27F6.1 protein.
          Length = 448

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 351 DITKIPGDFNLESHGHNGRLA 289
           ++  +P D +++SHGHN  LA
Sbjct: 177 NVLLLPDDLSVDSHGHNTNLA 197


>AL031635-4|CAA21043.2|  269|Caenorhabditis elegans Hypothetical
           protein Y47D3B.6 protein.
          Length = 269

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/34 (47%), Positives = 17/34 (50%)
 Frame = +3

Query: 186 VTPLAPVAASPPCACGRASVVARAVGRPDCXAPG 287
           V P+ PVA   PCA   A V A A   P C  PG
Sbjct: 213 VAPVIPVALGAPCAAPVAPVYASAA--PAC-VPG 243


>AF043692-2|AAB97531.1|  253|Caenorhabditis elegans Hypothetical
           protein C17F3.3 protein.
          Length = 253

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -1

Query: 231 RTRKGETPQREQEG*REGDPSGDAKNES 148
           +  K E P++ +   +EG+P G+ KN +
Sbjct: 180 KEEKKEEPKKSEAPKKEGEPKGEVKNNA 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,167,943
Number of Sequences: 27780
Number of extensions: 80308
Number of successful extensions: 311
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 311
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)