Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV10b11r
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor staphylo... 45 5e-05
U23177-8|AAM22054.1| 409|Caenorhabditis elegans Hypothetical pr... 44 9e-05
U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical pr... 44 9e-05
U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical pr... 31 1.1
AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical... 31 1.1
AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical... 31 1.1
Z78062-2|CAB01499.2| 689|Caenorhabditis elegans Hypothetical pr... 29 3.5
U41992-5|AAA83356.1| 549|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine r... 29 4.6
>U40029-11|AAA81130.1| 914|Caenorhabditis elegans Tudor
staphylococcal nuclease homologprotein 1 protein.
Length = 914
Score = 45.2 bits (102), Expect = 5e-05
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Frame = -2
Query: 524 DRPPLNGIYENKA---CIAIFPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADV 354
+ PPL G Y K C+A F +D WYR + S + ++ ++DYGN E I +
Sbjct: 731 EHPPLAGSYTTKRGDLCVAKFSQDGQWYRCKV--ESVRAGQAEIVYIDYGNRETIEAVKL 788
Query: 353 REIKDEWAELPPVTISAKLYNVQLS 279
+I +A P + YN+ L+
Sbjct: 789 AQIPAGFANFP---AGVREYNLALA 810
>U23177-8|AAM22054.1| 409|Caenorhabditis elegans Hypothetical
protein C56G2.1b protein.
Length = 409
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = -2
Query: 470 PEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDEWAELPPVTISAKLYN 291
P N W+RA +QY + + V+FVDYG ++ D+R+I+ + LP + L +
Sbjct: 241 PVGNAWFRAVTVQYFDETDEVFVKFVDYGGYSKMARQDLRQIRTDLMSLPFQSTEVMLAH 300
Query: 290 VQ 285
V+
Sbjct: 301 VR 302
>U23177-7|AAM22053.1| 867|Caenorhabditis elegans Hypothetical
protein C56G2.1a protein.
Length = 867
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/62 (32%), Positives = 34/62 (54%)
Frame = -2
Query: 470 PEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDEWAELPPVTISAKLYN 291
P N W+RA +QY + + V+FVDYG ++ D+R+I+ + LP + L +
Sbjct: 699 PVGNAWFRAVTVQYFDETDEVFVKFVDYGGYSKMARQDLRQIRTDLMSLPFQSTEVMLAH 758
Query: 290 VQ 285
V+
Sbjct: 759 VR 760
>U80953-2|AAB52556.1| 1107|Caenorhabditis elegans Hypothetical
protein B0412.3 protein.
Length = 1107
Score = 31.1 bits (67), Expect = 0.87
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -2
Query: 263 NSIVKVYTDVLLDKGPFHTKIIEYENDIP 177
NSIV V+ + DK P H +++ E DIP
Sbjct: 32 NSIVNVFRNRTADKPPLHIRVVSGELDIP 60
>Z82078-9|CAE11308.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 439 IEARYHKLSSGNIAIHALFSYIPFNGGLSPPSLWTELNNWL 561
++ R KL+ +AIH L S PF+G L ++NW+
Sbjct: 313 LKDRIDKLTQAQLAIHQLVSSQPFSGDPYNQRLLRSIDNWM 353
>Z82078-8|CAB04948.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 439 IEARYHKLSSGNIAIHALFSYIPFNGGLSPPSLWTELNNWL 561
++ R KL+ +AIH L S PF+G L ++NW+
Sbjct: 311 LKDRIDKLTQAQLAIHQLVSSQPFSGDPYNQRLLRSIDNWM 351
>Z81483-8|CAB03966.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = -2
Query: 515 PLNGIYENKACIA--IFPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIK 342
P +Y+N IA I N + +L + NRI RF GN+++++ ++
Sbjct: 1031 PTFAVYQNAEVIANTILVTSNCEHVQVLLDGNVMCNRI--RFA--GNVKMVTIVGSGNLE 1086
Query: 341 DEWAELPPVTISAKLYNVQLSPDAEMNSIVKVYTDVLL 228
+ LP +IS ++Y+V + + NS ++ T+ +L
Sbjct: 1087 STYMMLPDASISFEMYSVVRIDEIQCNSF-EILTETIL 1123
>Z81471-1|CAB03887.2| 1776|Caenorhabditis elegans Hypothetical protein
C14B4.2 protein.
Length = 1776
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = -2
Query: 515 PLNGIYENKACIA--IFPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIK 342
P +Y+N IA I N + +L + NRI RF GN+++++ ++
Sbjct: 1031 PTFAVYQNAEVIANTILVTSNCEHVQVLLDGNVMCNRI--RFA--GNVKMVTIVGSGNLE 1086
Query: 341 DEWAELPPVTISAKLYNVQLSPDAEMNSIVKVYTDVLL 228
+ LP +IS ++Y+V + + NS ++ T+ +L
Sbjct: 1087 STYMMLPDASISFEMYSVVRIDEIQCNSF-EILTETIL 1123
>AL023844-13|CAE11312.1| 949|Caenorhabditis elegans Hypothetical
protein Y48A6B.11b protein.
Length = 949
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 439 IEARYHKLSSGNIAIHALFSYIPFNGGLSPPSLWTELNNWL 561
++ R KL+ +AIH L S PF+G L ++NW+
Sbjct: 313 LKDRIDKLTQAQLAIHQLVSSQPFSGDPYNQRLLRSIDNWM 353
>AL023844-12|CAA19535.2| 947|Caenorhabditis elegans Hypothetical
protein Y48A6B.11a protein.
Length = 947
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +1
Query: 439 IEARYHKLSSGNIAIHALFSYIPFNGGLSPPSLWTELNNWL 561
++ R KL+ +AIH L S PF+G L ++NW+
Sbjct: 311 LKDRIDKLTQAQLAIHQLVSSQPFSGDPYNQRLLRSIDNWM 351
>Z78062-2|CAB01499.2| 689|Caenorhabditis elegans Hypothetical
protein F16D3.2 protein.
Length = 689
Score = 29.1 bits (62), Expect = 3.5
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Frame = -2
Query: 581 DKTTSQYNQLFSSVQSEGGDRPPLNGIYENKACIAIFPEDNL---WYRASILQYSSTQNR 411
+K + S +++E P N AC+ + W RA I++ +
Sbjct: 533 EKMNQEIQDFMSQIRNEKS--VPFEMWRPNHACLVQLNDSTTILKWSRAMIIKIET--QL 588
Query: 410 IKVRFVDYGNIEVISPADVREIKDEWAELPPVTISAKL 297
I + +D G +V+ +D+R + ++A+LPP I L
Sbjct: 589 IFLFILDSGFRKVVPSSDLRLMPQKFAKLPPFAIPCTL 626
>U41992-5|AAA83356.1| 549|Caenorhabditis elegans Hypothetical
protein F32E10.5 protein.
Length = 549
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/73 (23%), Positives = 27/73 (36%)
Frame = -2
Query: 515 PLNGIYENKACIAIFPEDNLWYRASILQYSSTQNRIKVRFVDYGNIEVISPADVREIKDE 336
P N + AC WYR I + V +D G + +DVR +
Sbjct: 121 PENHLIPTVACAVCI--QGTWYRGKIENVPPRGIWMYVNLIDAGMSRQVMKSDVRRLPLA 178
Query: 335 WAELPPVTISAKL 297
+ PP+ + A +
Sbjct: 179 FGHYPPMVVKATI 191
>AF068709-13|AAO26012.1| 321|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 56 protein.
Length = 321
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/57 (22%), Positives = 32/57 (56%)
Frame = -3
Query: 640 DVIFLLLTIRTYWNLVYYTMIKQLRSITNYLARSRVKVVTGHH*MVYTRIKRVSQYF 470
DV+ + + +NL+Y+T I + T L ++VKV++ + +V ++ +++ +
Sbjct: 187 DVMDQAINVTAIFNLIYFTAIIIIGLTTVLLVSNKVKVISQANSLVKRKLTKIAMTY 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,601,078
Number of Sequences: 27780
Number of extensions: 322963
Number of successful extensions: 764
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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