Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV10b10r
         (535 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p...    35   0.042
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p...    35   0.042
Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical pr...    31   0.69 
Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical pr...    31   0.69 
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical ...    29   1.6  
Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    28   3.7  
U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    28   3.7  
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    28   3.7  
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical pr...    28   4.8  
DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin p...    28   4.8  
AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin p...    28   4.8  
U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna bi...    27   8.5  
AF098504-2|AAN84807.1|   73|Caenorhabditis elegans Nematode spec...    27   8.5  

>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
 Frame = +2

Query: 128 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 307
           + +GG    N DG +DN    +   D +G   D +G+    +GD +   +        GN
Sbjct: 526 NGKGGAGNGNGDGDKDNNGKGNGTGDGDG---DGNGNGNGLTGDGNGTGDGDNNESGNGN 582

Query: 308 SRSNDNRSGLHGSSHYTTXXXXXXXXXXXXXXXXXXXXECRSNGNWFKDTGRSHGD-QGE 484
              +D  SG        T                    +   NGN  K  G   GD +GE
Sbjct: 583 GDGSDKNSGAGAG----TKPENREGGDGNGNGTGDGNGDGNDNGNGSKGLGTGSGDGKGE 638

Query: 485 GNE 493
           GN+
Sbjct: 639 GNK 641



 Score = 30.7 bits (66), Expect = 0.69
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +2

Query: 125 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGG 304
           +DN G  +G+ D     NG    L  D NG G    G N N SG+ +  D   K  G G 
Sbjct: 540 KDNNGKGNGTGDGDGDGNGNGNGLTGDGNGTG---DGDN-NESGNGN-GDGSDKNSGAGA 594

Query: 305 NSRSNDNRSGLHGSSHYT 358
            ++  +NR G  G+ + T
Sbjct: 595 GTKP-ENREGGDGNGNGT 611



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +2

Query: 131 NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTS--GDVDVHDELHKRRGTGG 304
           + G  +G   DG +  G+        NG   D SG  +N    G  D  D+  K  G+G 
Sbjct: 657 SNGSGNGKEGDGNKSGGS--GKGGAGNGKSGDGSGDGKNNGNGGTGDGKDKNGKGSGSGD 714

Query: 305 NSRSNDNRSG 334
           N +S    +G
Sbjct: 715 NDKSGTRAAG 724


>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
           protein T05C12.10 protein.
          Length = 1169

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 1/123 (0%)
 Frame = +2

Query: 128 DNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGN 307
           + +GG    N DG +DN    +   D +G   D +G+    +GD +   +        GN
Sbjct: 526 NGKGGAGNGNGDGDKDNNGKGNGTGDGDG---DGNGNGNGLTGDGNGTGDGDNNESGNGN 582

Query: 308 SRSNDNRSGLHGSSHYTTXXXXXXXXXXXXXXXXXXXXECRSNGNWFKDTGRSHGD-QGE 484
              +D  SG        T                    +   NGN  K  G   GD +GE
Sbjct: 583 GDGSDKNSGAGAG----TKPENREGGDGNGNGTGDGNGDGNDNGNGSKGLGTGSGDGKGE 638

Query: 485 GNE 493
           GN+
Sbjct: 639 GNK 641



 Score = 30.7 bits (66), Expect = 0.69
 Identities = 26/78 (33%), Positives = 36/78 (46%)
 Frame = +2

Query: 125 RDNRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGG 304
           +DN G  +G+ D     NG    L  D NG G    G N N SG+ +  D   K  G G 
Sbjct: 540 KDNNGKGNGTGDGDGDGNGNGNGLTGDGNGTG---DGDN-NESGNGN-GDGSDKNSGAGA 594

Query: 305 NSRSNDNRSGLHGSSHYT 358
            ++  +NR G  G+ + T
Sbjct: 595 GTKP-ENREGGDGNGNGT 611



 Score = 27.5 bits (58), Expect = 6.4
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = +2

Query: 131 NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTS--GDVDVHDELHKRRGTGG 304
           + G  +G   DG +  G+        NG   D SG  +N    G  D  D+  K  G+G 
Sbjct: 657 SNGSGNGKEGDGNKSGGS--GKGGAGNGKSGDGSGDGKNNGNGGTGDGKDKNGKGSGSGD 714

Query: 305 NSRSNDNRSG 334
           N +S    +G
Sbjct: 715 NDKSGTRAAG 724


>Z46343-8|CAA86461.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +2

Query: 137 GGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRS 316
           GG +  ND+   +NG     +  N G G    GS     GD D +   +K  G G     
Sbjct: 353 GGGNTDNDNWGSNNGNSGGSWG-NGGTG-GSGGSGGGNWGDNDNYGSSNKWNGNGNQDND 410

Query: 317 NDNRSGLHGSSHY 355
           NDN  G +  + Y
Sbjct: 411 NDNFGGGYSKNGY 423



 Score = 27.9 bits (59), Expect = 4.8
 Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
 Frame = +2

Query: 128 DNRGGVDGSND-DGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDE--------L 280
           +N G   G+ND DG    G+  S  + +N  G   SGSN    GD +  +E         
Sbjct: 247 NNYGNSWGTNDNDGNSWKGSGNSNGNSDNWGGSSGSGSNGGNDGDSNYGNEGSWKPSGNS 306

Query: 281 HKRRGTGGNSRSNDNRSGLHGSSHYTTXXXXXXXXXXXXXXXXXXXXECRS-NGNWFKDT 457
           + R   GGN   +   S  +G  +Y +                       + N NW  + 
Sbjct: 307 YGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNN 366

Query: 458 GRSHGDQGEG 487
           G S G  G G
Sbjct: 367 GNSGGSWGNG 376


>Z35598-9|CAA84658.1|  549|Caenorhabditis elegans Hypothetical
           protein F10F2.9 protein.
          Length = 549

 Score = 30.7 bits (66), Expect = 0.69
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = +2

Query: 137 GGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRS 316
           GG +  ND+   +NG     +  N G G    GS     GD D +   +K  G G     
Sbjct: 353 GGGNTDNDNWGSNNGNSGGSWG-NGGTG-GSGGSGGGNWGDNDNYGSSNKWNGNGNQDND 410

Query: 317 NDNRSGLHGSSHY 355
           NDN  G +  + Y
Sbjct: 411 NDNFGGGYSKNGY 423



 Score = 27.9 bits (59), Expect = 4.8
 Identities = 33/130 (25%), Positives = 47/130 (36%), Gaps = 10/130 (7%)
 Frame = +2

Query: 128 DNRGGVDGSND-DGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDE--------L 280
           +N G   G+ND DG    G+  S  + +N  G   SGSN    GD +  +E         
Sbjct: 247 NNYGNSWGTNDNDGNSWKGSGNSNGNSDNWGGSSGSGSNGGNDGDSNYGNEGSWKPSGNS 306

Query: 281 HKRRGTGGNSRSNDNRSGLHGSSHYTTXXXXXXXXXXXXXXXXXXXXECRS-NGNWFKDT 457
           + R   GGN   +   S  +G  +Y +                       + N NW  + 
Sbjct: 307 YGRNRGGGNEGGDQWGSNNNGGDNYGSELSNNWGGSNGGSGSNGGSGGGNTDNDNWGSNN 366

Query: 458 GRSHGDQGEG 487
           G S G  G G
Sbjct: 367 GNSGGSWGNG 376


>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
            K10C2.1 protein.
          Length = 2314

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
 Frame = +2

Query: 164  GLRDNGALFSLFDDNNGLGLDFSGSNR--NTSGDVDVHDELHKRRGTGGNSRSNDNRSGL 337
            G  D GA  S    +N  GL   G+ +  N     DV   LH     G  S  ND  +GL
Sbjct: 875  GFIDQGAKISTSSTDNQGGLACYGTTQAANWINLPDVRSALHVSSAAGAWSACNDTINGL 934

Query: 338  HGSSHYTT 361
            +   H  T
Sbjct: 935  YVQQHNDT 942


>AL032627-8|CAB63354.2|  373|Caenorhabditis elegans Hypothetical
           protein Y41C4A.5 protein.
          Length = 373

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = +2

Query: 131 NRGGVDGSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNS 310
           N     G+++ G  ++G+     +  NG   + +G+N   SG+ + +   +   G+ GN 
Sbjct: 211 NNNNSSGNSNYGSNNSGSGNGNSNSGNGNSGNGNGNNAGNSGNGNGNSNGNNGNGSNGNG 270

Query: 311 RSN--DNRSGLHGSSH 352
             N  +  +G +G+ H
Sbjct: 271 NGNNGNGNNGNNGNGH 286


>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/59 (28%), Positives = 28/59 (47%)
 Frame = +2

Query: 176 NGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSH 352
           N +  +L   +NG   + SGS RN   + +  +   K RG  GN++   N +  H  +H
Sbjct: 535 NSSTSALTPRSNGQKKETSGSVRNEGSNNNSQNRNTKYRGAVGNNQHMYNGNEGHSGAH 593


>U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical
           protein ZK1290.6 protein.
          Length = 507

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
 Frame = +2

Query: 191 SLFDDNNGLGLDFSGSNRN----TSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSH 352
           +LF    G GL  +    N       D+   +E     G GG   S+    G HG SH
Sbjct: 10  ALFKKPRGAGLMKNEQTHNLQRVVQNDITCPEEQRSTGGKGGGGGSHGGHGGSHGGSH 67


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 200 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 361
           D   G     S S R TS D    D   +RR    +SRS    S  +GSSH+++
Sbjct: 39  DRRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSHSRSRSPPSSANGSSHWSS 91


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 200 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 361
           D   G     S S R TS D    D   +RR    +SRS    S  +GSSH+++
Sbjct: 67  DRRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSHSRSRSPPSSANGSSHWSS 119


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 200 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 361
           D   G     S S R TS D    D   +RR    +SRS    S  +GSSH+++
Sbjct: 125 DRRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSHSRSRSPPSSANGSSHWSS 177


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = +2

Query: 200 DDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTT 361
           D   G     S S R TS D    D   +RR    +SRS    S  +GSSH+++
Sbjct: 126 DRRGGRSRSRSPSRRRTSRDRR-DDRSSRRRRDRSHSRSRSPPSSANGSSHWSS 178


>Z54327-1|CAA91119.1|  569|Caenorhabditis elegans Hypothetical
           protein C26D10.1 protein.
          Length = 569

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +2

Query: 233 GSNRNTSGDVDVHDELHK 286
           G+ RN++G+VDVH  LHK
Sbjct: 269 GNLRNSNGNVDVHPLLHK 286


>DQ340626-1|ABC65814.1|  782|Caenorhabditis elegans chondroitin
           proteoglycan-4 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 176 NGALFSLFDDNNGLG-LDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSG 334
           +G    L D   G    D SGS+ + SGD +      +  G G +S S D  SG
Sbjct: 669 SGESIELRDSGEGSAEYDASGSSGDNSGDFNSSGSSGEASGVGESSGSEDQGSG 722


>AF022968-9|AAB69883.3|  782|Caenorhabditis elegans Chondroitin
           proteoglycan protein 4 protein.
          Length = 782

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = +2

Query: 176 NGALFSLFDDNNGLG-LDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSG 334
           +G    L D   G    D SGS+ + SGD +      +  G G +S S D  SG
Sbjct: 669 SGESIELRDSGEGSAEYDASGSSGDNSGDFNSSGSSGEASGVGESSGSEDQGSG 722


>U21320-5|AAA62536.2|  332|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 7 protein.
          Length = 332

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 22/71 (30%), Positives = 29/71 (40%)
 Frame = +2

Query: 149 GSNDDGLRDNGALFSLFDDNNGLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNR 328
           G ND   R++   F    DN G G  F G  R      D  ++     G GG+     +R
Sbjct: 244 GGNDRDRRESSGGFR---DNRGGGGGFGGGGR------DRFNDRSGGGGYGGDRDRGGDR 294

Query: 329 SGLHGSSHYTT 361
            G  G S Y+T
Sbjct: 295 GGDRGGSRYST 305


>AF098504-2|AAN84807.1|   73|Caenorhabditis elegans Nematode
           specific peptide family,group d protein 10 protein.
          Length = 73

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +2

Query: 212 GLGLDFSGSNRNTSGDVDVHDELHKRRGTGGNSRSNDNRSGLHGSS 349
           G G  + GSN ++SG    +      +G GG S +N+N  G  G +
Sbjct: 12  GYGSGYMGSNASSSG----YAREDYAQGQGGQSNNNNNNQGGSGGN 53


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,171,870
Number of Sequences: 27780
Number of extensions: 93510
Number of successful extensions: 443
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)