Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C13
         (347 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    31   0.17 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    31   0.17 
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    30   0.40 
Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical pr...    26   8.5  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 102  EHGASSCISGKRGRRC---CNIWHWGXVDSISGSRARFQLXGNSGRKHSRCCTSILRKFS 272
            EH   SC+SG  G +C   C   +    D ISG     Q  G  G+K +R C   L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC---LKGYF 1249

Query: 273  GRQHCVTVDCCCHGS 317
            GR HC +  C C  S
Sbjct: 1250 GR-HC-SQSCRCANS 1262



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 99   KEHGASSCISGKRGRRCCNIWHWGXVDSISGSRARFQLXGNSGRKHSRCCTSILRKFSGR 278
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC    L  +SG 
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194

Query: 279  QHC 287
            +HC
Sbjct: 1195 EHC 1197


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +3

Query: 102  EHGASSCISGKRGRRC---CNIWHWGXVDSISGSRARFQLXGNSGRKHSRCCTSILRKFS 272
            EH   SC+SG  G +C   C   +    D ISG     Q  G  G+K +R C   L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC---LKGYF 1249

Query: 273  GRQHCVTVDCCCHGS 317
            GR HC +  C C  S
Sbjct: 1250 GR-HC-SQSCRCANS 1262



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 19/63 (30%), Positives = 26/63 (41%)
 Frame = +3

Query: 99   KEHGASSCISGKRGRRCCNIWHWGXVDSISGSRARFQLXGNSGRKHSRCCTSILRKFSGR 278
            KE+G   CI G  G  C  +  +G        R   +   +  RK  RC    L  +SG 
Sbjct: 1138 KENGDCECIDGWTGPSCEFLCPFGQFGRNCAQRCNCKNGASCDRKTGRC--ECLPGWSG- 1194

Query: 279  QHC 287
            +HC
Sbjct: 1195 EHC 1197


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
            protein Y45F10B.10 protein.
          Length = 1592

 Score = 30.3 bits (65), Expect = 0.40
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -3

Query: 315  YHGSSSQL*HNAAGH*ISVVCLCSSGCASCRYSR*AETEHGSH*WSQXTPS 163
            YH +S QL     GH  +V CLCSS  +S   S   +       +SQ TP+
Sbjct: 896  YHIASEQLIGTFKGHTAAVTCLCSSNDSSLFVSTSFDKTVNVWVFSQSTPT 946


>Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical
           protein F44D12.2 protein.
          Length = 342

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -2

Query: 166 QCHILQHRRPRLPLMQLEAPCSFNFCXLRAIAQ 68
           +CH+  +  PRLP ++  + C   FC + A ++
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,665,507
Number of Sequences: 27780
Number of extensions: 105934
Number of successful extensions: 180
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)