Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fe100P01_F_C07
         (620 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   164   5e-41
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.       30   1.2  
Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  164 bits (398), Expect = 5e-41
 Identities = 85/142 (59%), Positives = 102/142 (71%)
 Frame = +3

Query: 192 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 371
           TKIASEGLKGRVFEVSL DL    ++E  FRKF+LIAE VQG+NVL NFH M +T DKL 
Sbjct: 53  TKIASEGLKGRVFEVSLGDLN---NSEADFRKFKLIAEDVQGKNVLTNFHAMSMTHDKLC 109

Query: 372 WMVKKWQTLIEANIDVXTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAITKKMCEI 551
            +VKKW TLIEAN  V TTDGY LRVF I FT K     +KT Y + +++R I  +M   
Sbjct: 110 SIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKKTSYTKTSKIRKIRSEMIGC 169

Query: 552 ITRDVTNSELREVVNXLIPDSI 617
           I ++VT  +L+EVV+ LIPDSI
Sbjct: 170 IEKEVTGCDLKEVVSKLIPDSI 191



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 12/15 (80%), Positives = 15/15 (100%)
 Frame = +1

Query: 91  VDPFTRKDWYDVKAP 135
           VDPF+RK+WYD+KAP
Sbjct: 20  VDPFSRKEWYDIKAP 34



 Score = 32.3 bits (70), Expect = 0.29
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 137 SMFSKRQVGTTLVNRTQXNENCFGRIEGKSF 229
           +MF+ RQVG TL+NRTQ  +     ++G+ F
Sbjct: 35  NMFNTRQVGKTLINRTQGTKIASEGLKGRVF 65


>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
            C25G4.5 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 397  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 221
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 220  PFNPSEAI 197
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z66497-4|CAA91284.1|  401|Caenorhabditis elegans Hypothetical
           protein K08F8.2 protein.
          Length = 401

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = -2

Query: 409 LASMRVCHFLTIHLSLSVVRSMPWKLQ-STLRPCTY-SAINLNLRKDLSASVSACRSARE 236
           +AS++    LT+ L L     +P  LQ   L+P T  S +  + ++  S S S+  S+  
Sbjct: 132 IASLQASSMLTVPL-LQAASHIPSMLQLCQLQPTTIQSPVYASTQQPASTSASSLFSSSS 190

Query: 235 TSKTLPFNPSEA 200
           +S   PF PSE+
Sbjct: 191 SSAFHPFRPSES 202


>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
          Length = 1263

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = -2

Query: 397  RVCHFLTIHLSLSVVRSMPWKLQSTLRPCTYSAINLNLRKDLSASVSACRSARE-TSKTL 221
            R  H    H  LS+  SMP ++  T+RP +  +  L++  + +  +   RS R   S  +
Sbjct: 1122 RKVHINGCHTLLSLALSMPSRMGETVRPSSIVSFLLHIANENNLQIVQDRSKRSWMSDFI 1181

Query: 220  PFNPSEAI 197
              N SE++
Sbjct: 1182 VLNSSESL 1189


>Z69634-5|CAA93456.1|  731|Caenorhabditis elegans Hypothetical
           protein B0001.7 protein.
          Length = 731

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/37 (37%), Positives = 24/37 (64%)
 Frame = +3

Query: 213 LKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRN 323
           L+G  + +S+ D +A TD E S +  R IAE+++ R+
Sbjct: 201 LRGCSWIMSVVDGKAQTDGEFSDKDLREIAEFIRERH 237


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,902,399
Number of Sequences: 27780
Number of extensions: 284456
Number of successful extensions: 772
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)