Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fdpeP01_F_D01
         (873 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical pr...    32   0.62 
Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical pr...    28   7.6  
X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit ...    28   7.6  
U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha nicot...    28   7.6  

>L10990-8|AAB59173.2|  223|Caenorhabditis elegans Hypothetical
           protein C30A5.3 protein.
          Length = 223

 Score = 31.9 bits (69), Expect = 0.62
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 595 YKDTRRFPLEAPSCALLFRPCRLPDTCPPFSLREAWRFLIA 717
           Y+  R+F +E    ALL +   +P+TC   +  E W FL A
Sbjct: 71  YEHLRQFCIELNGLALLLQRECIPETCQQMTATEQWIFLCA 111


>Z80220-5|CAB02308.1|  493|Caenorhabditis elegans Hypothetical
           protein T08G11.5 protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 464 SHVLSCVIXLILWITVLPPLSELIPLAA 381
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>X83888-1|CAA58765.1|  493|Caenorhabditis elegans beta-1 subunit of
           nicotinic acetylcholinereceptor protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 464 SHVLSCVIXLILWITVLPPLSELIPLAA 381
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


>U81144-1|AAB39358.1|  493|Caenorhabditis elegans non-alpha
           nicotinic acetylcholinereceptor subunit precursor
           protein.
          Length = 493

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = -2

Query: 464 SHVLSCVIXLILWITVLPPLSELIPLAA 381
           S +LS V+ L+L   +LPP S  IPL A
Sbjct: 267 SVLLSIVVFLLLVSKILPPTSSTIPLMA 294


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,732,711
Number of Sequences: 27780
Number of extensions: 331378
Number of successful extensions: 933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2192413762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)