Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0084
         (858 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p...    28   9.8  

>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
            protein T19D12.1 protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 3/90 (3%)
 Frame = +2

Query: 2    QWIPQGCXA--GRTXTGPTWSVAHGRVSRR-RSMKF*TSLGDTTGQPSSTCRNPWPSSGL 172
            Q IP    A  G + +GPT +   G  S +  S    T++  T  Q SST  N   ++  
Sbjct: 1575 QSIPSSTAANTGSSTSGPTVATTQGSSSTQTNSNTGSTTVATTVTQGSSTGGNSGSTTVN 1634

Query: 173  *QTFEVASMPAYTIA*LRSALTATRITAQP 262
             Q+  VAS  A + A + S+ T     A P
Sbjct: 1635 FQSSSVASTVASSTANIESSTTPIPTCASP 1664


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,969,437
Number of Sequences: 27780
Number of extensions: 274140
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)