Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0126
(578 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical... 28 4.2
Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical p... 28 5.5
Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical p... 28 5.5
Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical pr... 28 5.5
AF040661-11|AAG24210.1| 211|Caenorhabditis elegans Hypothetical... 27 7.3
Z78416-1|CAB01682.1| 425|Caenorhabditis elegans Hypothetical pr... 27 9.6
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 27 9.6
AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical ... 27 9.6
AF293976-1|AAG17881.1| 425|Caenorhabditis elegans CAB-1 protein. 27 9.6
>AF040661-10|AAG24215.1| 426|Caenorhabditis elegans Hypothetical
protein W10G11.6 protein.
Length = 426
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 301 RPSGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRE 185
RPSG WC GI +AE + A G + ++ R+
Sbjct: 93 RPSGGWCMRVFTGIHDAKIEAERACAAKGGTLTGLQNRD 131
Score = 27.5 bits (58), Expect = 7.3
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -2
Query: 340 REEPQFRTFGSCTRPSGRWCEATIRGIMPNASKAEASLA 224
R EP +R F RPSG WC G +A+KA+A A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTGF--HAAKADAEAA 288
>Z70686-12|CAB54289.1| 2584|Caenorhabditis elegans Hypothetical
protein R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 560 VTTGITGL----WQPSVHSDVVFDPSMSALPIIAKQNSPSV 450
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70686-11|CAA94615.1| 2606|Caenorhabditis elegans Hypothetical
protein R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 560 VTTGITGL----WQPSVHSDVVFDPSMSALPIIAKQNSPSV 450
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>Z70686-8|CAM35837.1| 1427|Caenorhabditis elegans Hypothetical protein
R11A8.7d protein.
Length = 1427
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 560 VTTGITGL----WQPSVHSDVVFDPSMSALPIIAKQNSPSV 450
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 1098 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1138
>Z70686-7|CAM35836.1| 1405|Caenorhabditis elegans Hypothetical protein
R11A8.7c protein.
Length = 1405
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 560 VTTGITGL----WQPSVHSDVVFDPSMSALPIIAKQNSPSV 450
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 1076 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 1116
>Z70310-9|CAB54294.1| 2584|Caenorhabditis elegans Hypothetical protein
R11A8.7b protein.
Length = 2584
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 560 VTTGITGL----WQPSVHSDVVFDPSMSALPIIAKQNSPSV 450
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2255 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2295
>Z70310-8|CAA94370.1| 2606|Caenorhabditis elegans Hypothetical protein
R11A8.7a protein.
Length = 2606
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -1
Query: 560 VTTGITGL----WQPSVHSDVVFDPSMSALPIIAKQNSPSV 450
VTTG++ L W P+ + DP+ S P+ A+ S SV
Sbjct: 2277 VTTGLSSLELKGWMPASFAPSARDPNRSQPPLFARSQSNSV 2317
>AF040661-11|AAG24210.1| 211|Caenorhabditis elegans Hypothetical
protein W10G11.15 protein.
Length = 211
Score = 27.5 bits (58), Expect = 7.3
Identities = 14/55 (25%), Positives = 22/55 (40%)
Frame = -2
Query: 301 RPSGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 137
RPSG WC G + AE S G + ++ R Q ++++ S
Sbjct: 49 RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103
>Z78416-1|CAB01682.1| 425|Caenorhabditis elegans Hypothetical
protein C23H4.1 protein.
Length = 425
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 174 EPPDSRGSTVSISLPDSARLASALEAFGIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQY 353
+ P T+S D RLA++ E G PR +S L V G+ Y
Sbjct: 263 QEPQPAKQTISSQTVDKRRLATSAEYSGSAPRYSSSSLLLLAVGTVMCVGLIGTVAGGTY 322
Query: 354 YYRNDK 371
YY+N++
Sbjct: 323 YYKNNR 328
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 37 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 144
YIRT +VLRKKP S+ D +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299
>AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical
protein Y48G10A.2 protein.
Length = 375
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/51 (19%), Positives = 28/51 (54%)
Frame = -2
Query: 274 TIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETR 122
+++G + + + ++ K ++ EP+E+ + D+ + ++HSK E +
Sbjct: 306 SLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKK 356
>AF293976-1|AAG17881.1| 425|Caenorhabditis elegans CAB-1 protein.
Length = 425
Score = 27.1 bits (57), Expect = 9.6
Identities = 19/66 (28%), Positives = 28/66 (42%)
Frame = +3
Query: 174 EPPDSRGSTVSISLPDSARLASALEAFGIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQY 353
+ P T+S D RLA++ E G PR +S L V G+ Y
Sbjct: 263 QEPQPAKQTISSQTVDKRRLATSAEYSGSAPRYSSSSLLLLAVGTVMCVGLIGTVAGGTY 322
Query: 354 YYRNDK 371
YY+N++
Sbjct: 323 YYKNNR 328
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,675,041
Number of Sequences: 27780
Number of extensions: 277426
Number of successful extensions: 848
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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