Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0082
         (397 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    29   1.6  
AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    28   2.8  
AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical...    27   3.7  
Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical pr...    27   4.9  
DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homo...    27   4.9  
AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditi...    27   4.9  
AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditi...    27   4.9  
AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.       27   4.9  
Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical pr...    27   6.4  
Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical pr...    27   6.4  
AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical...    27   6.4  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    26   8.5  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    26   8.5  
U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical pr...    26   8.5  
AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical...    26   8.5  

>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 14/55 (25%), Positives = 23/55 (41%)
 Frame = -2

Query: 297 RPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 133
           RPSG WC     G +   + AE S    G  +  ++ R      Q    ++++ S
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103


>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -2

Query: 336 REEPQFRTFGSCTRPSGRWCEATIRGISLNASKAEASLAESGKDMLTVE-PRES 178
           R EP +R F    RPSG WC     G     + AEA+    G  +  ++ P+E+
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTGFHAAKADAEAACQAVGATLSGLQNPQEA 305



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 297 RPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRE 181
           RPSG WC     GI     +AE + A  G  +  ++ R+
Sbjct: 93  RPSGGWCMRVFTGIHDAKIEAERACAAKGGTLTGLQNRD 131


>AF040661-12|AAG24221.1|  210|Caenorhabditis elegans Hypothetical
           protein W10G11.14 protein.
          Length = 210

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -2

Query: 330 EPQFRTFGSCTRPSGRWCEATIRGISLNASKAEASLAESGKDMLTVE 190
           EP ++ F    RPSG WC     G +   + AE S    G  +  ++
Sbjct: 41  EPGWKFFN---RPSGGWCMRVFAGFNAKKADAEKSCQAVGSTLSGIQ 84


>Z70037-4|CAA93877.1|  146|Caenorhabditis elegans Hypothetical
           protein T27D12.3 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 297 RPSGRWCEATIRGISLNASKAEAS 226
           RPSG WC     G+ L  ++ EAS
Sbjct: 35  RPSGPWCVKLFVGLYLQGNRNEAS 58


>DQ178242-1|ABA18181.1|  578|Caenorhabditis elegans Frizzled homolog
           protein.
          Length = 578

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  VIPGPSEPSCTC*EKXR*HRSPRSKWASTSRLAF 132
           VI GPSE  CTC +  +   S +SK  + +  A+
Sbjct: 186 VIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219


>AF016413-2|ABA54421.1|  578|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform a protein.
          Length = 578

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  VIPGPSEPSCTC*EKXR*HRSPRSKWASTSRLAF 132
           VI GPSE  CTC +  +   S +SK  + +  A+
Sbjct: 186 VIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219


>AF016413-1|ABA54422.1|  550|Caenorhabditis elegans Caenorhabditis
           frizzled homologprotein 2, isoform b protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  VIPGPSEPSCTC*EKXR*HRSPRSKWASTSRLAF 132
           VI GPSE  CTC +  +   S +SK  + +  A+
Sbjct: 186 VIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219


>AB026113-1|BAA84678.1|  550|Caenorhabditis elegans Cfz2 protein.
          Length = 550

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  VIPGPSEPSCTC*EKXR*HRSPRSKWASTSRLAF 132
           VI GPSE  CTC +  +   S +SK  + +  A+
Sbjct: 186 VIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219


>Z93376-2|CAD59146.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 248 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 99
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>Z82279-4|CAD59150.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 248 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 99
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>AL132949-42|CAD59173.2|  578|Caenorhabditis elegans Hypothetical
           protein E01F3.1b protein.
          Length = 578

 Score = 26.6 bits (56), Expect = 6.4
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 248 TPLRPKPA*PNPARICSLWSPESREALNN---VTLLVAFRIQNARRDVEAHLD 99
           T L   PA PN AR  S W  E+  + NN     + +  +I  +R++   H+D
Sbjct: 119 TGLPTVPAEPNKARSSSYWKTEASPSNNNEHETPVDLLRKISVSRKESGTHVD 171


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/71 (22%), Positives = 29/71 (40%)
 Frame = +2

Query: 104  NGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRLIPRMVASHH 283
            N  R++      + R +       PD  G  + ++  D   LA+  E  ++    +  H 
Sbjct: 1171 NKARKQKKNLAAKKRQMVKTQTAAPDYDGRNIDLNESDQQTLATLTEQIKVTQAEIELHR 1230

Query: 284  RPLGRVHEPNV 316
            R L + HE N+
Sbjct: 1231 RDL-KKHESNL 1240


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 16/71 (22%), Positives = 29/71 (40%)
 Frame = +2

Query: 104  NGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRLIPRMVASHH 283
            N  R++      + R +       PD  G  + ++  D   LA+  E  ++    +  H 
Sbjct: 1171 NKARKQKKNLAAKKRQMVKTQTAAPDYDGRNIDLNESDQQTLATLTEQIKVTQAEIELHR 1230

Query: 284  RPLGRVHEPNV 316
            R L + HE N+
Sbjct: 1231 RDL-KKHESNL 1240


>U29096-4|AAA68408.1| 1599|Caenorhabditis elegans Hypothetical protein
            F30H5.3 protein.
          Length = 1599

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 348  YCSVREEPQFRTFGSCTRPSGRWCEATIRGISL 250
            +  +  EPQ    G  T PSG  C+  I G  L
Sbjct: 1162 FIGITGEPQSCAIGQSTCPSGYSCQRAISGAQL 1194


>AF125459-12|AAD12832.1|  533|Caenorhabditis elegans Hypothetical
           protein Y25C1A.4 protein.
          Length = 533

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = -2

Query: 297 RPSGRWCEATIRGISLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 133
           R SG WC     G       AEA+  + G  +  +E +E     Q    +R+S +
Sbjct: 370 RQSGGWCMKVFTGFHAAKVDAEAACKDVGATLSGLENKEEAIFIQNALLARISQA 424


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,756,928
Number of Sequences: 27780
Number of extensions: 163618
Number of successful extensions: 529
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)