Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0078
         (988 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024756-6|AAK29881.1|  105|Caenorhabditis elegans Glutaredoxin ...    63   3e-10
U40945-3|AAA81721.2|  146|Caenorhabditis elegans Hypothetical pr...    50   3e-06
AC006831-2|AAF39994.2|  119|Caenorhabditis elegans Hypothetical ...    40   0.002
AC006831-3|ABD63200.1|   96|Caenorhabditis elegans Hypothetical ...    36   0.059
Z82082-4|CAE45093.1|  210|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U58751-6|AAZ82854.1|  131|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin red...    30   2.2  
AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin r...    30   2.2  
U80451-9|AAB37843.1|  285|Caenorhabditis elegans Collagen protei...    28   8.9  
AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AC024756-6|AAK29881.1|  105|Caenorhabditis elegans Glutaredoxin
           protein 10 protein.
          Length = 105

 Score = 63.3 bits (147), Expect = 3e-10
 Identities = 36/84 (42%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +1

Query: 10  FXKEAISXXKVVVXXKSXCPXXKLAKDVFEKVK---QPIKVIELNERDDGNTXQXNLAQL 180
           F    +   KVVV  KS CP    A+   E V      ++ IE++ER D N  Q  L  L
Sbjct: 5   FVDGLLQSSKVVVFSKSYCPYCHKARAALESVNVKPDALQWIEIDERKDCNEIQDYLGSL 64

Query: 181 TGFRTVPQVFINGNCVGGGSDVKA 252
           TG R+VP+VFING   GGG D  A
Sbjct: 65  TGARSVPRVFINGKFFGGGDDTAA 88


>U40945-3|AAA81721.2|  146|Caenorhabditis elegans Hypothetical
           protein F10D7.3 protein.
          Length = 146

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
 Frame = +1

Query: 37  KVVVXXKSXCPXXKLAKDVFEKVK-QPIKVIELNERDDGNTXQXNLAQLTGFRTVPQVFI 213
           KV+V  K+ CP  K  K +    +   +K++EL+  +     Q  L + +G  TVPQ+FI
Sbjct: 45  KVMVYSKTYCPWSKRLKAILANYEIDDMKIVELDRSNQTEEMQEILKKYSGRTTVPQLFI 104

Query: 214 NGNCVGGGSDVKA 252
           +G  VGG  + KA
Sbjct: 105 SGKFVGGHDETKA 117


>AC006831-2|AAF39994.2|  119|Caenorhabditis elegans Hypothetical
           protein ZK121.1a protein.
          Length = 119

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
 Frame = +1

Query: 16  KEAISXXKVVVXXKSXCPXXKLAKDVFEKVKQPIKVIELN-----ERDDGNTXQXNLAQL 180
           +E +    VV+  K+ C     AKD+F  V+   K + L+     + DD       L   
Sbjct: 14  QEQVKKDPVVMYTKTSCTFCNRAKDLFSDVRVAYKEVNLDTLKASQPDDYLGIVNGLVYT 73

Query: 181 TGFRTVPQVFINGNCVGGGSDVKAXMN 261
           T   +VPQ+F+ G  +GG +++ A  N
Sbjct: 74  TRQTSVPQIFVCGRFIGGYTELDALRN 100


>AC006831-3|ABD63200.1|   96|Caenorhabditis elegans Hypothetical
           protein ZK121.1b protein.
          Length = 96

 Score = 35.5 bits (78), Expect = 0.059
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
 Frame = +1

Query: 55  KSXCPXXKLAKDVFEKVKQPIKVIELN-----ERDDGNTXQXNLAQLTGFRTVPQVFING 219
           K+ C     AKD+F  V+   K + L+     + DD       L   T   +VPQ+F+ G
Sbjct: 4   KTSCTFCNRAKDLFSDVRVAYKEVNLDTLKASQPDDYLGIVNGLVYTTRQTSVPQIFVCG 63

Query: 220 NCVGGGSDVKAXMN 261
             +GG +++ A  N
Sbjct: 64  RFIGGYTELDALRN 77


>Z82082-4|CAE45093.1|  210|Caenorhabditis elegans Hypothetical
           protein ZC334.7 protein.
          Length = 210

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 112 PIKVIEL-NERDDGNTXQXNLAQLTGFRTVPQVFINGNCVGGGSDV 246
           P   +EL  + D     Q +L ++T   T P VF+ GN +GG SD+
Sbjct: 144 PSHFLELVGDEDWQRQLQVDLLKVTRQATFPYVFVCGNFIGGSSDL 189


>U58751-6|AAZ82854.1|  131|Caenorhabditis elegans Hypothetical
           protein C07G1.8 protein.
          Length = 131

 Score = 31.5 bits (68), Expect = 0.96
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 169 LAQLTGFRTVPQVFINGNCVGGGSDVKA 252
           L  LT  RTVPQ+FI G  VGG +++ A
Sbjct: 76  LMDLTRQRTVPQIFICGKFVGGYTELNA 103


>U61947-1|AAB03136.3|  667|Caenorhabditis elegans Thioredoxin
           reductase protein 1 protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 106 KQPIKVIELNERDDGNTXQXNLAQLTGFRTVPQVFINGNCVGGGSDVKA 252
           ++P+++ E+ +       Q  +  LT   + P ++I GN VGG  ++KA
Sbjct: 110 EKPLEIPEIKKLQVSRASQKVIQYLTLHTSWPLMYIKGNAVGGLKELKA 158


>AF148217-1|AAD41826.1|  667|Caenorhabditis elegans thioredoxin
           reductase protein.
          Length = 667

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 106 KQPIKVIELNERDDGNTXQXNLAQLTGFRTVPQVFINGNCVGGGSDVKA 252
           ++P+++ E+ +       Q  +  LT   + P ++I GN VGG  ++KA
Sbjct: 110 EKPLEIPEIKKLQVSRASQKVIQYLTLHTSWPLMYIKGNAVGGLKELKA 158


>U80451-9|AAB37843.1|  285|Caenorhabditis elegans Collagen protein
           73 protein.
          Length = 285

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 20/67 (29%), Positives = 21/67 (31%)
 Frame = -3

Query: 932 PASPXXLPXPXSSXGTGXVXGKLTPNCRSLXXXQVXGXGPPPGXGXXPVRFSPGALFXXR 753
           PA     P P    G     G+  PN R          GPP   G       PGA    R
Sbjct: 145 PAGNAGNPGPKGPPGQPGAPGEQGPNGRPGAPGAPGPQGPPGTAGNDGTPGQPGAPGQVR 204

Query: 752 XXPXXPG 732
             P  PG
Sbjct: 205 TVPAPPG 211


>AC006682-1|AAF39956.3| 1853|Caenorhabditis elegans Hypothetical
           protein R193.2 protein.
          Length = 1853

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -3

Query: 260 FXNALTSEPPPTQLPFIKT*GTVLXP 183
           +  A    PPPT+LP I T GT   P
Sbjct: 417 YPTAAPPTPPPTRLPLITTIGTTTNP 442


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,748,667
Number of Sequences: 27780
Number of extensions: 221281
Number of successful extensions: 413
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2573710548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)