Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0256
         (765 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium chann...    29   2.7  
U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium chann...    29   2.7  
AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassi...    29   2.7  

>U41556-9|AAK39192.1|  692|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform a protein.
          Length = 692

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = -3

Query: 484 RGTKSHTYYIALLHRVLCCASLNV-SVVPN 398
           RG K+ TY++A+L  VL C +L+V S +P+
Sbjct: 97  RGWKAATYHLAVLFMVLMCLALSVFSTMPD 126


>U41556-8|AAM51518.1|  740|Caenorhabditis elegans Potassium channel,
           kvqlt familyprotein 1, isoform b protein.
          Length = 740

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = -3

Query: 484 RGTKSHTYYIALLHRVLCCASLNV-SVVPN 398
           RG K+ TY++A+L  VL C +L+V S +P+
Sbjct: 145 RGWKAATYHLAVLFMVLMCLALSVFSTMPD 174


>AY572974-1|AAT77227.1|  692|Caenorhabditis elegans KQT-1 potassium
           channel protein.
          Length = 692

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/30 (46%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
 Frame = -3

Query: 484 RGTKSHTYYIALLHRVLCCASLNV-SVVPN 398
           RG K+ TY++A+L  VL C +L+V S +P+
Sbjct: 97  RGWKAATYHLAVLFMVLMCLALSVFSTMPD 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,058,771
Number of Sequences: 27780
Number of extensions: 213523
Number of successful extensions: 488
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)