Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0154
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    28   4.9  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    28   4.9  
U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical pr...    28   6.5  

>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 613 LTSPFRRFPSYSYTPLRHPPIFCSLYLRKLKQRLVEC 503
           L SPF   P+   +P  HPPIF +++ R    +++EC
Sbjct: 105 LDSPFANIPN---SP--HPPIFAAIFRRTTGVKVLEC 136


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 613 LTSPFRRFPSYSYTPLRHPPIFCSLYLRKLKQRLVEC 503
           L SPF   P+   +P  HPPIF +++ R    +++EC
Sbjct: 105 LDSPFANIPN---SP--HPPIFAAIFRRTTGVKVLEC 136


>U42437-3|AAA83495.1|  297|Caenorhabditis elegans Hypothetical
           protein F30B5.6 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 239 HECYSDRWVFRNSFIHLC 292
           ++CY D W+FR   +++C
Sbjct: 165 NQCYFDFWMFREKLVYIC 182


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,656,287
Number of Sequences: 27780
Number of extensions: 237751
Number of successful extensions: 410
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)