Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0147
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AF039047-11|AAB94230.1|  354|Caenorhabditis elegans Prion-like-(...    29   5.1  
AF104860-1|AAC79092.1|  128|Caenorhabditis elegans putative RNA-...    28   8.9  
AF063007-5|AAD47125.1|  712|Caenorhabditis elegans Prion-like-(q...    28   8.9  

>L14429-1|AAA28219.2|  575|Caenorhabditis elegans Hypothetical
           protein ZK652.6a protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = -1

Query: 794 SEHWAEITLRHTREGHRNALF*LDSRIPLVRASSELTVERRSYRMCRSRTK---RNRHDF 624
           S HW EI L HT E    +   + +R P+ R      + RR  R   SRT    R   D 
Sbjct: 148 SVHWTEIHL-HTMENLFRSTEPITTR-PVQRRPM---LARRGNRAGVSRTAAQGRPLQDE 202

Query: 623 TARKIRGRPENAGPDPVRNVRRFSRV 546
              ++     N GPD V ++RRF+ +
Sbjct: 203 IGAEMAALLRNMGPDSVEDIRRFTEM 228


>AF039047-11|AAB94230.1|  354|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 51
           protein.
          Length = 354

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 468 IDQTRHRPHPLPVQTRHAP--VLRANPYSEVTDPICRLPLPTLFYRLEALHLGD 313
           +D   + P P P Q  H P   +R NP      P+ + P+  L   L A H+GD
Sbjct: 53  VDLESNAPPPAPRQQHHVPPSAVRPNPMPP-QRPVAQQPVRAL-SALHAAHIGD 104


>AF104860-1|AAC79092.1|  128|Caenorhabditis elegans putative
           RNA-binding protein PRP-1 protein.
          Length = 128

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 732 LIRQSDSPCPCQF*ADR*TAVVQNVP-IAHETKPTRLYG*EDPRKAGERGSGSSP 571
           L  Q  SP P QF     T  +  +P +       +LYG +D RK+ ++ SGS P
Sbjct: 49  LFMQQYSPAPHQF-----TPFMNMMPNVGSSAGGRQLYGQDDERKSYDKMSGSKP 98


>AF063007-5|AAD47125.1|  712|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 59
           protein.
          Length = 712

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = -3

Query: 732 LIRQSDSPCPCQF*ADR*TAVVQNVP-IAHETKPTRLYG*EDPRKAGERGSGSSP 571
           L  Q  SP P QF     T  +  +P +       +LYG +D RK+ ++ SGS P
Sbjct: 633 LFMQQYSPAPHQF-----TPFMNMMPNVGSSAGGRQLYGQDDERKSYDKMSGSKP 682


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,556,671
Number of Sequences: 27780
Number of extensions: 432283
Number of successful extensions: 1321
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1321
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)