Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0119
         (745 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30423-9|CAA83012.1|  385|Caenorhabditis elegans Hypothetical pr...    29   4.6  
AY071926-1|AAL61544.1|  385|Caenorhabditis elegans RNA interfere...    29   4.6  
AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical ...    28   6.1  
AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z30423-9|CAA83012.1|  385|Caenorhabditis elegans Hypothetical
           protein T20G5.11 protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
 Frame = -2

Query: 669 TLLSGFRLPWPPSCCHERPTPF-MVSHERFLGALNTFGSSHSASSAYQNWPTWHRIRSPA 493
           ++  G  +P  PS   +  TP      E FL          +A + YQ  PTW  +  P 
Sbjct: 10  SVFGGSDVPMKPSRSEDNKTPRNRTDLEMFLKKTPLMVLEEAAKAVYQKTPTWGTVELP- 68

Query: 492 SSFE*AGVLTHLKFENRLRS 433
             FE   +L  +  + +  S
Sbjct: 69  EGFEMTLILNEITVKGQATS 88


>AY071926-1|AAL61544.1|  385|Caenorhabditis elegans RNA interference
           promoting factor protein.
          Length = 385

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
 Frame = -2

Query: 669 TLLSGFRLPWPPSCCHERPTPF-MVSHERFLGALNTFGSSHSASSAYQNWPTWHRIRSPA 493
           ++  G  +P  PS   +  TP      E FL          +A + YQ  PTW  +  P 
Sbjct: 10  SVFGGSDVPMKPSRSEDNKTPRNRTDLEMFLKKTPLMVLEEAAKAVYQKTPTWGTVELP- 68

Query: 492 SSFE*AGVLTHLKFENRLRS 433
             FE   +L  +  + +  S
Sbjct: 69  EGFEMTLILNEITVKGQATS 88


>AL034365-6|CAA22263.1|  347|Caenorhabditis elegans Hypothetical
           protein Y69E1A.6 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 566 RLVHPTAPVLLTKIGPLGTASDLRLHRSSKPE 471
           R  HP     +TK+GP      LRL + S PE
Sbjct: 315 RAQHPIISTQMTKVGPPSADISLRLKKLSAPE 346


>AC006624-7|AAF39787.1|  642|Caenorhabditis elegans Hypothetical
           protein C53D5.5 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
 Frame = +2

Query: 164 MKARSEHKCWDPKDGELCLVRSKSGETLMEAVA-----ILTCKSIVGTGYRGERL---IE 319
           M ++S    ++ K  EL  V    G T++  VA      L  K+ V       R+   ++
Sbjct: 521 MSSQSPLVIFNTKGAELMAVGGAGGSTIISGVAGVALHALWLKADVKQAVDAPRMHNQLQ 580

Query: 320 PSSSWFRPKFPSG*LASI 373
           P+ +W+ P FP   + S+
Sbjct: 581 PNYTWYEPNFPKAYVKSL 598


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,513,081
Number of Sequences: 27780
Number of extensions: 381730
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)