Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVf0106
(711 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 31 0.61
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 31 0.61
Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical p... 30 1.4
AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA s... 30 1.4
AF067622-4|ABD63224.1| 338|Caenorhabditis elegans Hypothetical ... 29 2.5
AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical ... 29 2.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 29 3.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 29 3.3
U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical... 28 7.6
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 28 7.6
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 539 RTKRNRHDLRQEDPRKAGERGSGSSPKRK 453
RT+R+RHD PR R S +SP R+
Sbjct: 182 RTRRDRHDSDNSPPRNRSRRDSDNSPPRR 210
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 31.5 bits (68), Expect = 0.61
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -2
Query: 347 PAPVRIRFPSKPDTPRSSEPILIPKLRIQFATS 249
P P ++ SKP TP + P+L+P++ + TS
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVELPAKTS 356
>Z66521-16|CAA91396.2| 793|Caenorhabditis elegans Hypothetical
protein W02B12.6a protein.
Length = 793
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 572 LNGGRTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRKTI 447
L G +CR+ TK DLR DP++ + G KR I
Sbjct: 738 LTGKEAAACRNYTKSIYEDLRSTDPKERSKTGKNIDWKRVPI 779
>AF188715-1|AAF05590.1| 793|Caenorhabditis elegans alanyl-tRNA
synthetase protein.
Length = 793
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 572 LNGGRTESCRSRTKRNRHDLRQEDPRKAGERGSGSSPKRKTI 447
L G +CR+ TK DLR DP++ + G KR I
Sbjct: 738 LTGKEAAACRNYTKSIYEDLRSTDPKERSKTGKNIDWKRVPI 779
>AF067622-4|ABD63224.1| 338|Caenorhabditis elegans Hypothetical
protein F33E11.6a protein.
Length = 338
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 367 RTNIDQTRHRSASASRPNPTRPGPQSQSL 281
+TNI Q+R S +P TRPGP +L
Sbjct: 213 QTNIIQSRRNSWKVMKPEATRPGPYPVAL 241
>AF067622-3|ABD63225.1| 447|Caenorhabditis elegans Hypothetical
protein F33E11.6b protein.
Length = 447
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 367 RTNIDQTRHRSASASRPNPTRPGPQSQSL 281
+TNI Q+R S +P TRPGP +L
Sbjct: 213 QTNIIQSRRNSWKVMKPEATRPGPYPVAL 241
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 588 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 686
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 588 WHGQGESDCLIKTKHCDGPRGC*RNVISAQCSE 686
W+ G C+ + K CDG + C QCS+
Sbjct: 267 WNCPGTGHCIDQLKLCDGSKDCADGADEQQCSQ 299
>U40953-3|AAB52650.1| 342|Caenorhabditis elegans Hypothetical
protein F53B1.4 protein.
Length = 342
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -3
Query: 361 NIDQTRHRSASASRPNPTRPGPQSQS----LFRSYGSNLPLP 248
+ + T +S SAS PNPT P S++ + RSY + LP
Sbjct: 144 SFEDTTPKSESASLPNPTNPYAASKAACEMVIRSYWHSYKLP 185
>AC024826-10|AAM97977.1| 435|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3c protein.
Length = 435
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -1
Query: 603 PLVRASSELTVERRSYR---IVPIAHETKPTRLTAGRSAEGRRTRVRIQSET*DDFRECH 433
P A ELT E R R I+ IA +T+P L SA G VRI +++ R
Sbjct: 9 PPKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDS-RTGRSKG 67
Query: 432 IKYIQF 415
I Y++F
Sbjct: 68 ICYVEF 73
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.9 bits (59), Expect = 7.6
Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -1
Query: 603 PLVRASSELTVERRSYR---IVPIAHETKPTRLTAGRSAEGRRTRVRIQSET*DDFRECH 433
P A ELT E R R I+ IA +T+P L SA G VRI +++ R
Sbjct: 154 PPKNAKLELTAEERDQRTLLIMQIARDTRPRDLEEFFSAVGAVRDVRIITDS-RTGRSKG 212
Query: 432 IKYIQF 415
I Y++F
Sbjct: 213 ICYVEF 218
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,860,549
Number of Sequences: 27780
Number of extensions: 411656
Number of successful extensions: 1424
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1424
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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