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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0085
         (691 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical...    29   3.1  
Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AF025453-12|AAK31405.1|  600|Caenorhabditis elegans Hypothetical
           protein C08F1.8 protein.
          Length = 600

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +1

Query: 460 SFLTATILV-YAIGAGITRLLAPDLPSNCSSLKY--LKCTHSDYEARKSPVSLFFVTT 624
           SF+T T L+ YA+   +  LL   L   CS + Y  LK T + Y ++K  +++FF  T
Sbjct: 451 SFVTITALMGYAV-CNLLVLLVEQLSETCSPMNYTLLKTTKATY-SQKMFMAIFFAIT 506


>Z81579-4|CAE17915.1|  212|Caenorhabditis elegans Hypothetical
           protein R13H4.8 protein.
          Length = 212

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -2

Query: 477 CCG*KARSCICAPRCRC 427
           CCG     C C PRC C
Sbjct: 79  CCGCGCGCCCCRPRCCC 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,415,974
Number of Sequences: 27780
Number of extensions: 319408
Number of successful extensions: 793
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).