Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20030
         (736 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical ...    99   4e-21
AC024748-3|AAO38567.1|   69|Caenorhabditis elegans Hypothetical ...    64   1e-10
Z36948-3|CAA85412.1|  421|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    28   7.9  

>AC024748-2|AAF60412.1|  236|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3a protein.
          Length = 236

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 46/88 (52%), Positives = 66/88 (75%), Gaps = 3/88 (3%)
 Frame = +1

Query: 253 SALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQE---S 423
           +A+EAV+DSSRYFV+++Q+DNG+ A++G GF +R D+FD NV LQDHF+++++  E    
Sbjct: 76  NAIEAVSDSSRYFVIRLQNDNGQQAFVGCGFQERGDAFDFNVTLQDHFRYIERSAELEKQ 135

Query: 424 DQTPQGQLDLGFKDGETIKINMKITKKD 507
           D +    LDL FK+G+TI IN  I KKD
Sbjct: 136 DLSAGPSLDLAFKEGQTISIN--IGKKD 161



 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 36/64 (56%), Positives = 48/64 (75%)
 Frame = +2

Query: 62  RIFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKCPID 241
           ++FV++IPP     G++AADWNL  P WTGRMRLV+ G  L M+LED  + +L+AKCPID
Sbjct: 13  KVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLEDGETCDLYAKCPID 71

Query: 242 KYPG 253
            +PG
Sbjct: 72  AHPG 75


>AC024748-3|AAO38567.1|   69|Caenorhabditis elegans Hypothetical
           protein Y110A2AR.3b protein.
          Length = 69

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 27/47 (57%), Positives = 35/47 (74%)
 Frame = +2

Query: 62  RIFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLED 202
           ++FV++IPP     G++AADWNL  P WTGRMRLV+ G  L M+LED
Sbjct: 13  KVFVYRIPP-IGTSGHKAADWNLDSPAWTGRMRLVAIGKRLEMRLED 58


>Z36948-3|CAA85412.1|  421|Caenorhabditis elegans Hypothetical
           protein D2089.5 protein.
          Length = 421

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
 Frame = +1

Query: 280 SRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVA-LQDHFKWLKKEQESDQTPQGQLDLG 456
           +R+ V+++ DD G+   I  G   RS  +D   + +QD ++ +K   E    P+  L   
Sbjct: 302 ARHKVIRLNDD-GKVNKIQFGNAMRSWFYDCEPSKVQDVYRAMKTFTEYCYQPRNMLKFR 360

Query: 457 FKDGETIK-INMKIT-KKDGVRAA 522
            +DG+T+   N ++   +DG R A
Sbjct: 361 LEDGDTVLWANQRLLHTRDGFRNA 384


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +1

Query: 295 VKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQTPQGQLDLGFKDGET 474
           +K   D G A         +  S   N+ALQ   K  K EQ   +  +  +    ++GE 
Sbjct: 110 LKTTTDRGLAQEAHFNVTTKEMSQKFNLALQQATK--KAEQCDKEKNEAVVKYAMREGEM 167

Query: 475 IKINMKITKKD 507
           +K+  +I+KKD
Sbjct: 168 MKLRDEISKKD 178


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +1

Query: 295 VKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQTPQGQLDLGFKDGET 474
           +K   D G A         +  S   N+ALQ   K  K EQ   +  +  +    ++GE 
Sbjct: 110 LKTTTDRGLAQEAHFNVTTKEMSQKFNLALQQATK--KAEQCDKEKNEAVVKYAMREGEM 167

Query: 475 IKINMKITKKD 507
           +K+  +I+KKD
Sbjct: 168 MKLRDEISKKD 178


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -2

Query: 240 SIGHFAN-NSPLVLSSNFMTNSFPFDTNLMRPVHCGSCKFQSA 115
           ++  FAN  S  + S N      P+ TNL + ++CG+ K+  A
Sbjct: 787 TLNMFANVKSACINSLNGTAWCNPYSTNLRKAIYCGAAKYAPA 829


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -3

Query: 62  VLH*NNTFISIHCL*KIML 6
           VL  NNTF+ IHCL +I+L
Sbjct: 57  VLFTNNTFVLIHCLARIVL 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,698,403
Number of Sequences: 27780
Number of extensions: 294793
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)