Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20015
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   6.1  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   6.1  
Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical pr...    27   8.1  
U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone...    27   8.1  
AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear recep...    27   8.1  

>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +2

Query: 92   FCLPHYRHWLWPNLNFIKKKKTFTILEVRRTKVASLDFMVRKEETWGVIMNVLTNGF 262
            FC+  + HW     + + K      L+V+ T   + +FM++     G+  +V  N F
Sbjct: 900  FCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSEDVSVNKF 956


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = +2

Query: 92  FCLPHYRHWLWPNLNFIKKKKTFTILEVRRTKVASLDFMVRKEETWGVIMNVLTNGF 262
           FC+  + HW     + + K      L+V+ T   + +FM++     G+  +V  N F
Sbjct: 775 FCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSEDVSVNKF 831


>Z66495-5|CAA91272.1|  501|Caenorhabditis elegans Hypothetical
           protein C36A4.6 protein.
          Length = 501

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 113 HWLWPNLNFIKKK 151
           HWLW NLN IK +
Sbjct: 42  HWLWGNLNIIKDR 54


>U53154-7|AAC25857.1|  356|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 42 protein.
          Length = 356

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 568 WRCTMTISIIRITELTIAIMEFLFIACVLYC---ALDNNEEC 452
           W+         + ++ + + EFLFI  ++Y     LD NEEC
Sbjct: 241 WKLNKQTLKTHLDDVQLDLPEFLFITALIYFDDGLLDQNEEC 282


>AF273783-1|AAG15132.1|  358|Caenorhabditis elegans nuclear receptor
           NHR-42 protein.
          Length = 358

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 568 WRCTMTISIIRITELTIAIMEFLFIACVLYC---ALDNNEEC 452
           W+         + ++ + + EFLFI  ++Y     LD NEEC
Sbjct: 243 WKLNKQTLKTHLDDVQLDLPEFLFITALIYFDDGLLDQNEEC 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,192,996
Number of Sequences: 27780
Number of extensions: 266704
Number of successful extensions: 774
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 774
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)