Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30088
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41263-3|AAC24425.1| 361|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z49132-8|CAA88987.1| 366|Caenorhabditis elegans Hypothetical pr... 31 1.4
U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 30 2.4
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 30 2.4
Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical p... 29 4.2
U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finge... 29 4.2
Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical pr... 28 7.4
U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical pr... 28 7.4
L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting... 28 7.4
L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting... 28 7.4
Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical pr... 28 9.7
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 28 9.7
U21308-14|ABB88222.1| 429|Caenorhabditis elegans Tryptophan hyd... 28 9.7
U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan hyd... 28 9.7
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 28 9.7
AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan hy... 28 9.7
>U41263-3|AAC24425.1| 361|Caenorhabditis elegans Hypothetical
protein T19D12.5 protein.
Length = 361
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -3
Query: 462 VFLASQVLDRVQVTEDIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAVGR 283
+ L VL ++Q +P G+GH I IL +N D+ + + L +VGR
Sbjct: 105 MILEQHVLAKMQGKPHVPMIYGSGHAEKYNFIIMQILSINVGDIKKSSPNKKLSQCSVGR 164
Query: 282 VV 277
++
Sbjct: 165 II 166
>Z49132-8|CAA88987.1| 366|Caenorhabditis elegans Hypothetical
protein ZK666.8 protein.
Length = 366
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = -3
Query: 462 VFLASQVLDRVQVTEDIPYWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAVGR 283
+ L VL ++Q +P+ G+GH + I +L N D+ R++ L +VGR
Sbjct: 111 MILEQAVLVKLQGKPHVPWIFGSGHTENFNFIVLQLLSANLGDIRRMSPTRKLSKSSVGR 170
Query: 282 V 280
+
Sbjct: 171 I 171
>U12966-6|AAM48533.1| 783|Caenorhabditis elegans Hypothetical
protein F54D8.6 protein.
Length = 783
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 117 GAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRRQE 230
G+G P +RP G+ G R R G ER RR++
Sbjct: 609 GSGMPGIDRPPGGDRMGDKQRRGARGGVKERERKRRRD 646
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 408 YWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAV 289
+WL G GA+ K+ L +N V+ N + +L+H+A+
Sbjct: 1946 FWLDRGGGAADAKVARAGLDGSNPLVIASNDLAELDHIAI 1985
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = -3
Query: 408 YWLGTGHGASGQKIHNLILGLNNADVLRVNRIHDLEHVAV 289
+WL G GA+ K+ L +N V+ N + +L+H+A+
Sbjct: 1946 FWLDRGGGAADAKVARAGLDGSNPLVIASNDLAELDHIAI 1985
>Z97628-3|CAB10727.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 147 RAGEATGRASLRDIRAGPDRAER 215
R GEA GRA+ RD R G R ER
Sbjct: 454 RMGEAAGRAAERDARRGRRRRER 476
>Z79755-13|CAB02114.1| 819|Caenorhabditis elegans Hypothetical
protein F43G9.12 protein.
Length = 819
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 147 RAGEATGRASLRDIRAGPDRAER 215
R GEA GRA+ RD R G R ER
Sbjct: 454 RMGEAAGRAAERDARRGRRRRER 476
>U12964-3|AAA91222.2| 1032|Caenorhabditis elegans Nhl (ring finger
b-box coiled coil)domain containing protein 2 protein.
Length = 1032
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 541 GEFVANLDNKLQADEHKAHLMVSGYRRPWTSATPGAEPSR-CLPKIQRI*FRRSGNTQNC 717
G +++ D+ L AD + ++V G PW PG + + C P+ ++ R +
Sbjct: 756 GFCLSDTDDILIADTNNHRVVVCGPPHPWKIGRPGTDDGQLCFPR--KVIALRGEAVRYV 813
Query: 718 GMHAGGRDATGRPRIFE 768
+ GG D R +IFE
Sbjct: 814 VLDKGG-DGKTRAQIFE 829
>Z78412-2|CAB01650.1| 169|Caenorhabditis elegans Hypothetical
protein M176.3 protein.
Length = 169
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 466 VRLLEYVPGELLKNCPLSEALLYQLGEF 549
VR L+ PG +LK PL+EA +GEF
Sbjct: 134 VRCLQENPGRVLKCAPLTEAFEKCVGEF 161
>U23529-1|AAK39160.1| 269|Caenorhabditis elegans Hypothetical
protein C15B12.2 protein.
Length = 269
Score = 28.3 bits (60), Expect = 7.4
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -2
Query: 748 RWHLCRPHAYHSSVYFHYDGIIFSVSLVGSG--LALPLALLKSM-GDGNHS 605
R LCR + SV FHY IF +SL+ S + L + LL S+ G G++S
Sbjct: 96 RHKLCRSFIRYFSVTFHYS--IFYLSLLSSAFLIGLNITLLSSVHGLGSNS 144
>L15188-5|AAA27949.3| 1780|Caenorhabditis elegans Gex interacting
protein protein8, isoform b protein.
Length = 1780
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 490 PARTPAVLRRVSCLPGPR*SAGDRRYSVLA 401
P +TPA ++R+ GPR +G R S+L+
Sbjct: 1416 PPKTPASIKRLQPTEGPRTLSGQRMKSILS 1445
>L15188-4|AAM22026.1| 1697|Caenorhabditis elegans Gex interacting
protein protein8, isoform c protein.
Length = 1697
Score = 28.3 bits (60), Expect = 7.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -2
Query: 490 PARTPAVLRRVSCLPGPR*SAGDRRYSVLA 401
P +TPA ++R+ GPR +G R S+L+
Sbjct: 1333 PPKTPASIKRLQPTEGPRTLSGQRMKSILS 1362
>Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical
protein F15A2.6b protein.
Length = 835
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 571 LQADEHKAHLMVSGYRRPWTSATPGAEPSRCLPKIQ 678
++ D K + + ++ PW S T A+P LP Q
Sbjct: 279 IEVDPGKRYSLADVFKHPWVSGTTKADPELELPMSQ 314
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical
protein F15A2.6a protein.
Length = 914
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 571 LQADEHKAHLMVSGYRRPWTSATPGAEPSRCLPKIQ 678
++ D K + + ++ PW S T A+P LP Q
Sbjct: 279 IEVDPGKRYSLADVFKHPWVSGTTKADPELELPMSQ 314
>U21308-14|ABB88222.1| 429|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform b protein.
Length = 429
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 253 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 378
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 382 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 422
>U21308-13|ABB88221.1| 532|Caenorhabditis elegans Tryptophan
hydroxylase protein1, isoform a protein.
Length = 532
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 253 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 378
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 485 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 525
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +1
Query: 571 LQADEHKAHLMVSGYRRPWTSATPGAEPSRCLPKIQ 678
++ D K + + ++ PW S T A+P LP Q
Sbjct: 279 IEVDPGKRYSLADVFKHPWVSGTTKADPELELPMSQ 314
>AF135186-1|AAD30115.1| 532|Caenorhabditis elegans tryptophan
hydroxylase protein.
Length = 532
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +1
Query: 253 NMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMNFLA 378
NMK P I ++PY ++++N+ S + V +++I N LA
Sbjct: 485 NMKRPFIVRYNPYTESVEVLNNSRSIMLAVNSLRSDI-NLLA 525
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,954,569
Number of Sequences: 27780
Number of extensions: 414177
Number of successful extensions: 1220
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1220
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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