Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30084X
         (319 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical pr...    31   0.18 
U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid elon...    29   0.55 
U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical pr...    28   1.7  
AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transport...    27   3.9  
AC006672-6|AAK84541.2|  341|Caenorhabditis elegans Hypothetical ...    26   6.8  
Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical pr...    25   8.9  

>U23170-4|AAC46701.1|  463|Caenorhabditis elegans Hypothetical
           protein F58F12.3 protein.
          Length = 463

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 58  QITHYEYNGNLTFKTYLYNN*HGITDSASIVFIYSYSFGVNLIQNTSVRFIAY 216
           +ITHYE N  +T KTY       I+ S  ++ +YS      L  +  V + AY
Sbjct: 133 RITHYEQNRGVTIKTY------AISQSQHVISVYSNENNHQLPLHDLVEYFAY 179


>U41011-5|AAA82288.2|  320|Caenorhabditis elegans Fatty acid
           elongation protein 3 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 183 NPKYVCEIYRLLLERNVLGDVGNSTSDLLRHWWGSGDSITSGLVF 317
           NPKY  E Y + L      D   ST+ +  HW+    SIT+ +V+
Sbjct: 7   NPKYGLENYSIFLPFETSFDAFRSTTWMQNHWY---QSITASVVY 48


>U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical
           protein F18A1.7 protein.
          Length = 266

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 135 QRQYCFHLFLFIRCKPNPKYVCEIYRLLLER 227
           + QYC H  LF +   + +Y+C    +L ER
Sbjct: 96  KEQYCDHNKLFAKASSSVEYMCATKHVLFER 126


>AF003138-6|ABE73338.1| 1551|Caenorhabditis elegans Abc transporter
            family protein 2 protein.
          Length = 1551

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/66 (19%), Positives = 32/66 (48%)
 Frame = +1

Query: 25   LLKLYFIYTCFQITHYEYNGNLTFKTYLYNN*HGITDSASIVFIYSYSFGVNLIQNTSVR 204
            ++ +  IY CF+++ +  +G   F   L    HG++ +    +++  +F V  +    + 
Sbjct: 986  IIVIMLIYLCFRVSDFTADGATFFAFLLLFFVHGMS-TILYAYVFQKAFSVAALSFVLIA 1044

Query: 205  FIAYFL 222
              +YF+
Sbjct: 1045 IGSYFV 1050


>AC006672-6|AAK84541.2|  341|Caenorhabditis elegans Hypothetical
           protein K08D12.2 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 26  C*NCTLFTLASKLHTTSITAI 88
           C NCT+FT   +L T   T+I
Sbjct: 115 CANCTIFTSCQQLRTRDCTSI 135


>Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical
           protein F19H8.2 protein.
          Length = 303

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = +3

Query: 228 NVLGDVGNSTSDL 266
           N+LG VGNST+DL
Sbjct: 91  NILGAVGNSTTDL 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,934,399
Number of Sequences: 27780
Number of extensions: 130383
Number of successful extensions: 314
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)