Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30041X
         (402 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical pr...    86   1e-17
Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical pr...    86   1e-17
Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical pr...    86   1e-17
Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical pr...    86   1e-17
X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.        86   1e-17
X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.        86   1e-17
X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.        86   1e-17
X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.        86   1e-17
U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4...    86   1e-17
U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4...    86   1e-17
U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4...    86   1e-17
AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical ...    68   3e-12
AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical...    52   2e-07
AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 comple...    43   7e-05
Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical pr...    35   0.019
Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>Z83241-1|CAB05817.1|  375|Caenorhabditis elegans Hypothetical
           protein T25C8.2 protein.
          Length = 375

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>Z81584-6|CAB04678.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.6 protein.
          Length = 376

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>Z81584-5|CAB04675.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.5 protein.
          Length = 376

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>Z81584-4|CAB04676.1|  376|Caenorhabditis elegans Hypothetical
           protein T04C12.4 protein.
          Length = 376

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16799-1|CAA34720.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16798-1|CAA34719.1|  375|Caenorhabditis elegans actin protein.
          Length = 375

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>X16797-1|CAA34718.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>X16796-1|CAA34717.1|  376|Caenorhabditis elegans actin protein.
          Length = 376

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>U64601-7|AAK77622.1|  332|Caenorhabditis elegans Actin protein 4,
           isoform b protein.
          Length = 332

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 293 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332


>U64601-6|AAT92068.1|  362|Caenorhabditis elegans Actin protein 4,
           isoform c protein.
          Length = 362

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 323 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362


>U64601-5|AAB04575.1|  376|Caenorhabditis elegans Actin protein 4,
           isoform a protein.
          Length = 376

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           KYSVWIGGSILASLSTFQQMWISK+EY+ESGP IVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>AC006833-3|AAF60947.2|  436|Caenorhabditis elegans Hypothetical
           protein ZK616.4 protein.
          Length = 436

 Score = 67.7 bits (158), Expect = 3e-12
 Identities = 28/39 (71%), Positives = 31/39 (79%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGIVHRKC 286
           KY  WIGGSIL SL TFQQMW+SK EY+ESG  IV +KC
Sbjct: 397 KYGAWIGGSILGSLGTFQQMWVSKAEYDESGKSIVEKKC 435


>AL132949-19|CAB70110.2|  374|Caenorhabditis elegans Hypothetical
           protein Y53F4B.22 protein.
          Length = 374

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 19/36 (52%), Positives = 28/36 (77%)
 Frame = -1

Query: 390 WIGGSILASLSTFQQMWISKEEYNESGPGIVHRKCF 283
           WIGGSI+ASL TF++MW+ K+EY + G   +H++ F
Sbjct: 339 WIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374


>AC024200-9|AAF36012.1|  425|Caenorhabditis elegans Arp2/3 complex
           component protein 1 protein.
          Length = 425

 Score = 43.2 bits (97), Expect = 7e-05
 Identities = 19/34 (55%), Positives = 24/34 (70%)
 Frame = -1

Query: 402 KYSVWIGGSILASLSTFQQMWISKEEYNESGPGI 301
           +Y+VW GGS+LAS S F Q+  +K EY E GP I
Sbjct: 381 RYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414


>Z71181-1|CAA94894.1|  395|Caenorhabditis elegans Hypothetical
           protein K07C5.1 protein.
          Length = 395

 Score = 35.1 bits (77), Expect = 0.019
 Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
 Frame = -1

Query: 402 KYSVWIGGSILASL--STFQQMWISKEEYNESG 310
           K+ V++GG++LA+L     Q  W+SK+EY E G
Sbjct: 351 KHMVFLGGAVLANLMKDRDQDFWVSKKEYEEGG 383


>Z83129-3|CAB05641.1|  300|Caenorhabditis elegans Hypothetical
           protein W06G6.6 protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 302 MPGPDSLYSSLEIHICWKVDREARMDPPIHTE 397
           +PG D LY  L I + + + + AR+    H+E
Sbjct: 167 LPGEDILYPVLAIFLIFDIRKSARIASAAHSE 198


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,420,598
Number of Sequences: 27780
Number of extensions: 146650
Number of successful extensions: 342
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)