Silkworm BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0002
         (431 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical ...    29   1.1  
AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a prote...    27   4.4  
U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical ...    27   5.8  

>AF106582-1|AAC78217.3| 1424|Caenorhabditis elegans Hypothetical
            protein W05F2.7 protein.
          Length = 1424

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +3

Query: 273  SNGD-INSAGDILTQNQQ----KGWWTIGLINSRYRYLTAETFGFKINANGTS 416
            S GD +++A + LT N       G W  G +NS  R+LT  T+    N NGT+
Sbjct: 982  STGDFLSNAWNSLTSNNSTGGGNGTWISGALNSTGRFLT-NTWNLLGNCNGTA 1033


>AC199166-1|ABO33245.1|  343|Caenorhabditis elegans F-box a protein
           protein 6 protein.
          Length = 343

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 24/95 (25%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
 Frame = -3

Query: 270 VRSL*FFTLELVYTAEEMQSRDREKTTK-CT---NYKNIIIIYISLHFSSIRLTLNCRN- 106
           ++S+  + LE +   E++   D+ K +K C    +Y NII I+   HF +I  T+   + 
Sbjct: 198 LKSIELWCLETIDDFEQLTRMDQWKKSKECKVFGHYFNIIPIHYLFHFENIEATVEYFSA 257

Query: 105 LS*ITVKKNCRFILSGEFLKCKIFINAYVSHSCSR 1
           L+ + ++ N   +    F +C  +I   +S   +R
Sbjct: 258 LNALNIRNN--LLGRSTFQQCIFWIYGTISVEVAR 290


>U58739-2|AAB00608.1|  391|Caenorhabditis elegans Hypothetical
           protein F28C10.4 protein.
          Length = 391

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 47  FKNSPDNINRQFFLTVIYDRFRQLSVNLIDE 139
           F+N PD +N +    ++Y   + +S+N IDE
Sbjct: 236 FENLPDFLNFKSIDRILYRTSKNMSINQIDE 266


>AF039038-1|AAK21435.1|  877|Caenorhabditis elegans Hypothetical
           protein K06A5.4 protein.
          Length = 877

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 11/16 (68%), Positives = 13/16 (81%)
 Frame = -2

Query: 229 RRRNAIARSRENHKMH 182
           RRR A+AR +EN KMH
Sbjct: 695 RRRGAVARVKENVKMH 710


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,985,544
Number of Sequences: 27780
Number of extensions: 168032
Number of successful extensions: 430
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)